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Protein Overview: del-4

General Information:
Name(s) found: del-4 / CE32505 [WormBase]
Description(s) found:
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  • WBGene00012116 locus:del-4 status:Partially_confirmed UniProt:P91835 protein_id:CAB03443.3 [WormBase]
  • gi|32563755|ref|NP_492230.2| DEgenerin Like family member (del-4) [Caenorhabditis elegans] [NCBI NR]
  • gi|25005028|emb|CAB03443.3| C. elegans protein T28B8.5, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep104.fasta]
  • CE32505 WBGene00012116 mechanosensory protein status:Partially_confirmed TR:P91835 protein_id:CAB03443.3 [wormpep150.fasta]
  • 32505 WBGene00012116 mechanosensory protein status:Partially_confirmed TR:P91835 protein_id:CAB03443.3 [wormpep130-phg-ecoli-orf-rand.fasta]
  • na+ channel, amiloride-sensitive family member, possibly N-myristoylated (59.3 kD) (1I714) [Caenorhabditis elegans]gi|25005028|emb|CAB03443.3| Hypothetical protein T28B8.5 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • mechanosensory protein status:Partially_confirmed TR:P91835 protein_id:CAB03443.3 [wormpep115.fasta.reversed]
  • CE32505 WBGene00012116 locus:del-4 mechanosensory protein status:Partially_confirmed UniProt:P91835_CAEEL protein_id:CAB03443.3 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE32505 WBGene00012116 locus:del-4 mechanosensory protein status:Partially_confirmed UniProt:P91835_CAEEL protein_id:CAB03443.3| [wormORF-contam.fasta]
  • Hypothetical protein T28B8.5 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • T28B8.5 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE32505 WBGene00012116 locus:del-4 mechanosensory protein status:Partially_confirmed UniProt:P91835 protein_id:CAB03443.3 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE32505 WBGene00012116 locus:del-4 status:Partially_confirmed UniProt:P91835 protein_id:CAB03443.3 [wormpep246-ecoli-contam.fasta]
  • DEgenerin Like OS=Caenorhabditis elegans GN=del-4 PE=3 SV=3 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 527 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: sodium ion transport [IEALink to PubMed article]
    ion transport [IEALink to PubMed article]
    Molecular Function: ion channel activity [IEALink to PubMed article]
    sodium channel activity [IEALink to PubMed article]
    amiloride-sensitive sodium channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVFWTGLKY VFTDFSCWTS THGVPHIGMA NARWLRAFWI LVVVVSIALF IWQFITLLTN  60
   61 YLSFSVNTET TLQFAERTFP TVTICHLNPW KLSETKSVDP DMSALIDAYN SDSSSAQFGL 120
  121 PASLTADRQQ QASKWTLMYS ERLNEKQYND AADIAYSYDD MVVSCTYNAK TCNITDFNDF 180
  181 YNPSYGNCLQ FNTDGMYSSS RAGPLYGLRM VMRTDQDTYL PWTEASGVII DIHMQDEIPY 240
  241 PDVFGYFAPP GTASSLGVSY VQTTRLSKPY GSCTTKTKLK TTHYTGTYTV EACFRSCMQE 300
  301 KIIASCGCYY PAYSHASNTT QYVSCDNGVQ TLSNLNCVDL INSADSTEFD VLTDCDCPQP 360
  361 CEIDSYGVTV STAQWPSDSY VPTECNPGGP SGPWDASGES CLDWYKANTI LIEIYYERMN 420
  421 FQVLTESPAY TFVNFISDVG GQVGLFLGMS IISAIEYLVL IFLVFFYCCT HKSRRAEIEQ 480
  481 LEMDIKKAKD DVDQVAEKRK KHQKANAELY EMDTAHDIVP PKPHSND

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..527] PSI-BLAST 99.0 No description for 2qtsA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle