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Protein Overview: CE32130

General Information:
Name(s) found: CE32130 [WormBase]
Description(s) found:
Found 16 descriptions.
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  • WBGene00015943 locus:tiar-1 status:Confirmed UniProt:Q8IG50 protein_id:CCD65018.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 305 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: morphogenesis of an epithelium [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    mRNA processing [IEALink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKRLLLDRE MKVNWAVEPG QQQSKIDTTR HFHVFVGDLS SEVDNQKLRE AFQPFGDVSD  60
   61 AKVIRDTNTT KSKGYGFVSY PKREEAERAI EQMNGQWLGR RTIRTNWATR KPGDQEKPSH 120
  121 YNEKSYDEIY NQTSGDNTSV YVGNIASLTE DEIRQGFASF GRITEVRIFK MQGYAFVKFD 180
  181 NKDAAAKAIV QMNNQDVGGQ LVRCSWGKTG DTGKTPGGSY GYGYGNSSSG GNSQPYSGYG 240
  241 GGGAYGGGQG GGGHGGPGQQ QSNANSQYWQ YYAQYYNNPQ LMQQWSNYWQ QQGGAPQQQN 300
  301 SGGHQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..224] PSI-BLAST 46.154902 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    2 View Details [225..305] MSA 1.407996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle