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Protein Overview: oxy-4

General Information:
Name(s) found: oxy-4 / CE29883 [WormBase]
Description(s) found:
Found 17 descriptions.
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  • WBGene00021902 locus:oxy-4 Probable cytosolic Fe-S cluster assembly factor oxy-4 status:Partially_confirmed UniProt:Q9N392 protein_id:CCD69851.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 457 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: electron transport [IEALink to PubMed article]
    Molecular Function: ferredoxin hydrogenase activity [IEALink to PubMed article]
    iron ion binding [IEALink to PubMed article]
    electron carrier activity [IEALink to PubMed article]
    iron-sulfur cluster binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDSGFSGVV RLSNVSDFIA PNLDCIIPLE TRTVEKKKEE SQVNIRTKKP KDKESSKTEE  60
   61 KKSVKISLAD CLACSGCITS AETVLVEEQS FGRVYEGIQN SKLSVVTVSP QAITSIAVKI 120
  121 GKSTNEVAKI IASFFRRLGV KYVIDSSFAR KFAHSLIYEE LSTTPSTSRP LLSSACPGFV 180
  181 CYAEKSHGEL LIPKISKIRS PQAISGAIIK GFLAKREGLS PCDVFHAAVM PCFDKKLEAS 240
  241 REQFKVDGTD VRETDCVIST AELLEEIIKL ENDEAGDVEN RSEEEQWLSA LSKGSVIGDD 300
  301 GGASGGYADR IVRDFVLENG GGIVKTSKLN KNMFSTTVES EAGEILLRVA KVYGFRNVQN 360
  361 LVRKMKTKKE KTDYVEIMAC PGGCANGGGQ IRYETMDERE EKLIKVEALY EDLPRQDDEE 420
  421 TWIKVREEWE KLDKNYRNLL FTDYRPVETN VAQVLKW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..457] PSI-BLAST 109.0 Fe-only hydrogenase, catalytic domain; Fe-only hydrogenase, N-terminal domain; Fe-only hydrogenase, second domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.47874003627413 bayes_pls_golite062009
  • NADH dehydrogenase (ubiquinone) activity
    		•  1.31458462821219 bayes_pls_golite062009
  • iron-sulfur cluster binding
    		•  1.18054918348653 bayes_pls_golite062009
  • metal cluster binding
    		•  1.18054918348653 bayes_pls_golite062009
  • NADH dehydrogenase activity
    		•  1.10428419414285 bayes_pls_golite062009
  • lamin binding
    		•  0.863386378061341 bayes_pls_golite062009
  • NADH dehydrogenase (quinone) activity
    		•  0.778342926116907 bayes_pls_golite062009
  • catalytic activity
    		•  0.488483980994331 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  0.312816353615077 bayes_pls_golite062009
  • ferredoxin hydrogenase activity
    		•  0.278768281741128 bayes_pls_golite062009
  • oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
    		•  0.278768281741128 bayes_pls_golite062009
  • protein binding
    		•  0.221871950373022 bayes_pls_golite062009
  • electron carrier activity
    		•  0.0554226204149908 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle