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Protein Overview: tbc-16

General Information:
Name(s) found: tbc-16 / CE29965 [WormBase]
Description(s) found:
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  • WBGene00018639 locus:tbc-16 status:Partially_confirmed UniProt:Q20600 protein_id:CCD71563.1 [WormBase]
  • gi|25151709|ref|NP_508988.2| TBC (Tre-2/Bub2/Cdc16) domain family member (tbc-16) [Caenorhabditis elegans] [NCBI NR]
  • gi|16950418|gb|AAC69111.3| Hypothetical protein F49E10.1 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep79.fasta]
  • CE29965 WBGene00018639 status:Partially_confirmed TR:Q20600 protein_id:AAC69111.3 [wormpep150.fasta]
  • 29965 WBGene00018639 status:Partially_confirmed TR:Q20600 protein_id:AAC69111.3 [wormpep130-phg-ecoli-orf-rand.fasta]
  • RabGAP/TBC domain containing protein (85.3 kD) (XG519) [Caenorhabditis elegans]gi|16950418|gb|AAC69111.3| Hypothetical protein F49E10.1 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q20600 protein_id:AAC69111.3 [wormpep115.fasta.reversed]
  • CE29965 status:Partially_confirmed TR:Q20600 protein_id:AAC69111.3 [wormpep80.hongbin]
  • CE29965 WBGene00018639 locus:tbc-16 status:Partially_confirmed UniProt:Q20600_CAEEL protein_id:AAC69111.3 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE29965 WBGene00018639 status:Partially_confirmed UniProt:Q20600_CAEEL protein_id:AAC69111.3| [wormORF-contam.fasta]
  • Hypothetical protein F49E10.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F49E10.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE29965 WBGene00018639 locus:tbc-16 status:Partially_confirmed UniProt:Q20600 protein_id:AAC69111.3 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
    • Organism: Caenorhabditis elegans
    Length: 744 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEALink to PubMed article]
    Biological Process: regulation of Rab GTPase activity [IEALink to PubMed article]
    Molecular Function: Rab GTPase activator activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAFSDFFKK AHDALNGIRG VNSFFLGRDG DVVYSKNNVC VHETDAKAGE DEAHCPGYLT  60
   61 VHCQCDESMG LTLILQWLPN LTLQKNPQSI RSVSPRGKQN RDEYFSPFVS LVVFSKMLSR 120
  121 FQNGQAMPAK PADEVKVSLL SDEESSVSLD IQIEECGTAV PVKQVKRPTT LVPYGQQEDH 180
  181 SFNDALGVPS INVIPHTPIK HENNEIRTEN AKDESDKMSQ SSLSTSCADE MSDKELSSSE 240
  241 DGDDDCEKPD PGVGLEKILE STQMFDKTPE QFALEHDLML TDTKSNDSEE QSRGRKKAAG 300
  301 TTSLFSVNLG KMRSMRVFYS NTECTSGQLV IATLDSHYKI LHFHHGGLDK LAYIFEQWSS 360
  361 IKARSVQEGS PSAIADKQLI ICQPAVTKVE KDPEEGLFEK ITLNTWRSYE NKSGVIIDSG 420
  421 TVRKHIFFAS MDVEMREKVW PFLLRVYPWE SSADQRENIK NDLFLEYQNI RKRRYRVTEN 480
  481 AQARWISIEN SIVKDVVRTD RKNPFFAGDN NPNSEIMKNI LLNYAVMYPD INYIQGMSDL 540
  541 LAPLLSTLKD EVDSYFCFKN FMQQTVFSST PQGNENLMET NLTYLRNMLR MFVPDFYEHL 600
  601 EKQRPDAMQL MFVHRWILLC FKREFPENYA LHIWECCWAH YRTNYFHLFV CVAIVSIYGK 660
  661 DVLTQDLPHD EILLFFASLA NHMDATLVLQ KARGLLFEFT RMEKIPCVLE GLCSAEMEQW 720
  721 NSHKSYRNFY CNQSHIDKES CPYQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..260] MSA 11.294996 View MSA. No confident structure predictions are available.
    2 View Details [261..362] deduced N/A No confident structure predictions are available.
    3 View Details [363..744] PSI-BLAST 66.69897 No description for 2qq8A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle