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Protein Overview: CE30262

General Information:
Name(s) found: CE30262 [WormBase]
Description(s) found:
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  • WBGene00016867 status:Partially_confirmed UniProt:Q22938 protein_id:CCD65413.1 [WormBase]
  • gi|25151409|ref|NP_508729.2| hypothetical protein C52B9.4 [Caenorhabditis elegans] [NCBI NR]
  • gi|18250210|gb|AAK39214.2| Hypothetical protein C52B9.4 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep79.fasta]
  • CE30262 WBGene00016867 status:Partially_confirmed TR:Q22938 protein_id:AAK39214.2 [wormpep150.fasta]
  • 30262 WBGene00016867 status:Partially_confirmed TR:Q22938 protein_id:AAK39214.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative endoplasmic reticulum protein, with at least 6 transmembrane domains, of eukaryotic origin (63.8 kD) (XE881) [Caenorhabditis elegans]gi|18250210|gb|AAK39214.2| Hypothetical protein C52B9.4 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q22938 protein_id:AAK39214.2 [wormpep115.fasta.reversed]
  • CE30262 status:Partially_confirmed TR:Q22938 protein_id:AAK39214.2 [wormpep80.hongbin]
  • CE30262 WBGene00016867 status:Partially_confirmed UniProt:Q22938_CAEEL protein_id:AAK39214.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE30262 WBGene00016867 status:Partially_confirmed UniProt:Q22938_CAEEL protein_id:AAK39214.2| [wormORF-contam.fasta]
  • C52B9.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein C52B9.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE30262 WBGene00016867 status:Partially_confirmed UniProt:Q22938 protein_id:AAK39214.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE30262 WBGene00016867 status:Partially_confirmed UniProt:Q22938 protein_id:CCD65413.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Uncharacterized protein OS=Caenorhabditis elegans GN=C52B9.4 PE=1 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 558 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTVTLLLAL ISHVASNLLM PGIYTEVVEI QQGKYQLIGV PQAALNGTVV QLEFTCDPEV  60
   61 ELEFDTEFVL RSSPCDKEFF NTKENERRQN LVFYFNETNQ NHIPDTFDYN EIVYYKSPVQ 120
  121 TISCKGSHGR FLFPNPTGPM AVKQVTPVHV DRVKRDAGLG SFHPAQSIPR DGIYYMIIKV 180
  181 VGKSFPSSPN SNTNVTISVQ WKAPYGYLSA IDWPLLRFYK IMCVFYSALA LIWVYCCIKY 240
  241 YRDILRIQYW IGGVIVLGMV EKAFFLSEYA TMNDTGSSID GILEVAEIVS CAKKTMSRVL 300
  301 VIIVCVGYGV VKPRLGQTLN QVAGVGLVYF IFCSIEGIAR VSKNTVEATR QKQFAALPLV 360
  361 LTEMIIFYWI FTSLASTIRM LRLKRNDIKL NVYRHFANTL AFSVIASVIF MLWSMIYHIF 420
  421 PTCRVDWKEL WVDTAFWHVL FCFILVVIMI LWRPSQNNQR YAFTPLLDDS EDENDQDEIF 480
  481 NAFAPGYDIL TARTSGSGAE TRKLREAEKE QERKDEAIKE DLKWIEENIP TTLADTLIGG 540
  541 LDDNEEFESK QLEVSKML

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] MSA 1.084983 View MSA. No confident structure predictions are available.
    2 View Details [118..204] MSA 1.158992 View MSA. No confident structure predictions are available.
    3 View Details [205..277] MSA 3.173996 View MSA. No confident structure predictions are available.
    4 View Details [278..485] MSA 3.173993 View MSA. No confident structure predictions are available.
    5 View Details [486..558] MSA 1.07498 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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