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Protein Overview: CE29676

General Information:
Name(s) found: CE29676 [WormBase]
Description(s) found:
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  • WBGene00016113 status:Partially_confirmed UniProt:Q18186 protein_id:AAK31455.3 [WormBase]
  • gi|25147309|ref|NP_495114.2| hypothetical protein C25H3.4 [Caenorhabditis elegans] [NCBI NR]
  • gi|16604114|gb|AAK31455.3| Hypothetical protein C25H3.4 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep79.fasta]
  • CE29676 WBGene00016113 status:Partially_confirmed TR:Q18186 protein_id:AAK31455.3 [wormpep150.fasta]
  • 29676 WBGene00016113 status:Partially_confirmed TR:Q18186 protein_id:AAK31455.3 [wormpep130-phg-ecoli-orf-rand.fasta]
  • ligatin (2F983) [Caenorhabditis elegans]gi|16604114|gb|AAK31455.3| Hypothetical protein C25H3.4 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q18186 protein_id:AAK31455.3 [wormpep115.fasta.reversed]
  • CE29676 status:Partially_confirmed TR:Q18186 protein_id:AAK31455.3 [wormpep80.hongbin]
  • CE29676 WBGene00016113 status:Partially_confirmed UniProt:Q18186_CAEEL protein_id:AAK31455.3 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE29676 WBGene00016113 status:Partially_confirmed UniProt:Q18186_CAEEL protein_id:AAK31455.3| [wormORF-contam.fasta]
  • C25H3.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein C25H3.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE29676 WBGene00016113 status:Partially_confirmed UniProt:Q18186 protein_id:AAK31455.3 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
    • Organism: Caenorhabditis elegans
    Length: 516 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: translational initiation [IEALink to PubMed article]
    Molecular Function: translation initiation factor activity [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKPFTVKK NTNQRNSDSR KLFNRLKEEV NGESNIDKKG QVAQVKLTTF EGTQMNVYTI  60
   61 DKVPMLFEFS ENGNIYPTVY YMWNNQKTFP VLICHEPVFS YLENGADLML PGVIRSSIFP 120
  121 FPTFRKGAPV AIAFYSSETE TVSGPSAVGC SMMSSEEMVV CGFKGKGVQV LHVFRDQLWD 180
  181 FGPKGVPPSC SLEDWNKIGV ESEESEEDEE TDERKELDAC QSTLPKEEEK QEVIQEEPME 240
  241 NLLTRCFLAG LKHRFTRNQL PMDVGQFYTQ CVLSCVPDGR RLDMKKTHFK KFATFLQEIN 300
  301 ELEITDERIV DEAPAEKAKF DAPVIAEYFA ITEPTLKLFP GCSKGDLLTV KQIKEFVTKY 360
  361 VNENKLAAGG SVRLDPIIFS VTKIQTDTTP WANLMKEIHS RMTATWHIRW PDGREIVRKV 420
  421 SPPRVEFKIE NRAGNKKVTL LNGLAMFGID IRTICHQIQT GVATSVTSQW EVPGVEGPQV 480
  481 LVQGNQIHFI ADLLIKSYGI DKKFMKGTEL AVKKKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..188] PSI-BLAST 36.154902 Crystal Structure of the Methanococcus jannaschii Cbf5 Nop10 Complex
    2 View Details [189..278] MSA 1.055986 View MSA. No confident structure predictions are available.
    3 View Details [279..410] deduced N/A No confident structure predictions are available.
    4 View Details [411..516] PSI-BLAST 25.69897 HUMAN TRANSLATION INITIATION FACTOR EIF1, NMR, 29 STRUCTURES

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.517703752865009 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • translation initiation factor activity
    		•  5.23106085535113 bayes_pls_golite062009
  • translation regulator activity
    		•  1.57171521305666 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.56505742236312 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.73754867508365 bayes_pls_golite062009
  • binding
    		•  0.496035645574177 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle