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Protein Overview: rnh-2

General Information:
Name(s) found: rnh-2 / CE28960 [WormBase]
Description(s) found:
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  • WBGene00004383 locus:rnh-2 Ribonuclease H2 subunit A status:Confirmed UniProt:Q9U6P6 protein_id:CAC70103.1 [WormBase]
  • gi|6010657|gb|AAF01208.1|AF181619_1 putative ribonuclease H2 large subunit [Caenorhabditis elegans] [NCBI NR]
  • gi|17536263|ref|NP_495796.1| RNase H family member (rnh-2) [Caenorhabditis elegans] [NCBI NR]
  • gi|15718212|emb|CAC70103.1| C. elegans protein T13H5.7, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|11387113|sp|Q9U6P6.1|RNH2A_CAEEL RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=RNase H(35) [NCBI NR]
  • (Q9U6P6) Ribonuclease HI large subunit (EC 3.1.26.4) (RNase HI large subunit) (RNase H(35)) [Swiss-Prot]
  • Ribonuclease H2 subunit A OS=Caenorhabditis elegans GN=rnh-2 PE=2 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE28960 WBGene00004383 locus:rnh-2 status:Confirmed SW:Q9U6P6 protein_id:CAC70103.1 [wormpep150.fasta]
  • 28960 WBGene00004383 locus:rnh-2 status:Confirmed SW:Q9U6P6 protein_id:CAC70103.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • RiboNuclease H (33.2 kD) (rnh-2) [Caenorhabditis elegans]gi|15718212|emb|CAC70103.1| Hypothetical protein T13H5.7 [Caenorhabditis elegans]gi|6010657|gb|AAF01208.1| putative ribonuclease H2 large subunit [Caenorhabditis elegans]gi|11387113|sp|Q9U6P6|RNH [nrdb_11152004_Chlamydomonas]
  • locus:rnh-2 status:Confirmed SW:Q9U6P6 protein_id:CAC70103.1 [wormpep115.fasta.reversed]
  • CE28960 status:Confirmed protein_id:CAC70103.1 [wormpep80.hongbin]
  • CE28960 WBGene00004383 locus:rnh-2 status:Confirmed UniProt:RNH2A_CAEEL protein_id:CAC70103.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE28960 WBGene00004383 locus:rnh-2 status:Confirmed UniProt:RNH2A_CAEEL protein_id:CAC70103.1| [wormORF-contam.fasta]
  • putative ribonuclease H2 large subunit [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • RNase H family member (rnh-2) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein T13H5.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Ribonuclease H2 subunit A (RNase H2 subunit A) (Ribonuclease HI subunit A) (Ribonuclease HI large subunit) (RNase HI large subunit) (RNase H(35)) [nr-271106-contam.fasta]
  • CE28960 WBGene00004383 locus:rnh-2 status:Confirmed UniProt:Q9U6P6 protein_id:CAC70103.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE28960 WBGene00004383 locus:rnh-2 status:Confirmed UniProt:Q9U6P6 protein_id:CAC70103.1 Ribonuclease H2 subunit A [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 297 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA metabolic process [IEALink to PubMed article]
    Molecular Function: ribonuclease H activity [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKCETERS KTWNNFGNGI PCVLGIDEAG RGPVLGPMVY AAAISPLDQN VELKNLGVDD  60
   61 SKALNEAKRE EIFNKMNEDE DIQQIIAYAL RCLSPELISC SMLKRQKYSL NEVSHEAAIT 120
  121 LIRDALACNV NVVEIKVDTV GPKATYQAKL EKLFPGISIC VTEKADSLFP IVSAASIAAK 180
  181 VTRDSRLRNW QFREKNIKVP DAGYGSGYPG DPNTKKFLQL SVEPVFGFCS LVRSSWKTAS 240
  241 TIVEKRCVPG SWEDDEEEGK SQSKRMTSWM VPKNETEVVP KRNVYFKERH MSNILTF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..297] PSI-BLAST 49.39794 No description for 2dfeA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle