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Protein Overview: CE28474

General Information:
Name(s) found: CE28474 [WormBase]
Description(s) found:
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  • WBGene00019011 status:Partially_confirmed UniProt:H2KYD3 protein_id:CCD62435.1 [WormBase]
  • gi|17507765|ref|NP_491460.1| hypothetical protein F57C9.4 [Caenorhabditis elegans] [NCBI NR]
  • gi|14916340|gb|AAK73887.1|AF003142_5 Hypothetical protein F57C9.4a [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE28474 WBGene00019011 status:Partially_confirmed TR:Q95R05 protein_id:AAK73887.1 [wormpep150.fasta]
  • 28474 WBGene00019011 status:Partially_confirmed TR:Q95R05 protein_id:AAK73887.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative nuclear protein family member, with a coiled coil domain (74.2 kD) (1F403) [Caenorhabditis elegans]gi|14916340|gb|AAK73887.1| Hypothetical protein F57C9.4a [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q95R05 protein_id:AAK73887.1 [wormpep115.fasta.reversed]
  • CE28474 status:Partially_confirmed TR:Q95R05 protein_id:AAK73887.1 [wormpep80.hongbin]
  • CE28474 WBGene00019011 status:Partially_confirmed UniProt:Q95R05_CAEEL protein_id:AAK73887.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE28474 WBGene00019011 status:Partially_confirmed UniProt:Q95R05_CAEEL protein_id:AAK73887.1| [wormORF-contam.fasta]
  • Hypothetical protein F57C9.4a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F57C9.4a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE28474 WBGene00019011 status:Partially_confirmed UniProt:Q95R05 protein_id:AAK73887.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE28474 WBGene00019011 status:Partially_confirmed UniProt:H2KYD3 protein_id:CCD62435.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE28474 WBGene00019011 locus:glo-2 status:Partially_confirmed UniProt:H2KYD3 protein_id:CCD62435.1 [wormbase_c_elegans_ws234_and_mcherry_10-06-2012_reversed.fasta]
  • Isoform of H2KYD4, Uncharacterized protein OS=Caenorhabditis elegans GN=CELE_F57C9.4 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 653 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEALink to PubMed article]
    Biological Process: DNA repair [IEALink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    DNA binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLIDSRVL YESDFSIFNG RLCSLRISAV TNNEEGIEKI RITSPSDATI LLDTSISSDE  60
   61 CSSFIEILKE ISTARKSDPS ILGPRIETIH SENEYPFQMV IEPINREKHS GKTLPLSHPP 120
  121 PQERCDYVLQ LYAKEKVQHQ SQKTKVEELT KQLQQARVDY NTLKQRCDFQ EKEIALLRQI 180
  181 TSSTGSGNRK RSRDDSETTH IKKRRCGCGD DGESCGSDCD GMDDDEEDET DTDVQMFRAA 240
  241 TAQLQMAAAG RNTQNGTSSH QKLKRKIPKS QSVSIGNARG MVTLPNLLQP KLEESDDGYN 300
  301 YSGRSSTQSN IDKLELAVRR ESIVDIGRAV IDGIKNKTLT ENQLEEFCKT THRPNISIFR 360
  361 FYKDSEECTK EENEAIMMGQ TVMMKMLDPQ EKAIAGVQAS ISSLSASFAN QTKLGLIKHQ 420
  421 RLTRSYVTLP VDYFPSIDLT EAYNSSNLFG ADATMQLTNF YQTVLKNVLN PVYMIWIYTY 480
  481 RPSTVRTCDK HFVEFPQNVI TTLFDMTTDI VGLYLPEYLL DGEIDPMDPF LLTIDAVDPF 540
  541 EEIMRRRTER KLANTTFNHA LGRAMKNLRS YHYDPTRGIL LNCSEKKNCG MHLQWEQMRK 600
  601 FREYCRKENV ACDDATPEEM IAFNLRASKV HYEDYSPGDA STSLNNINPA TET

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..280] deduced N/A No confident structure predictions are available.
    2 View Details [281..523] deduced N/A No confident structure predictions are available.
    3 View Details [524..653] MSA 4.021991 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle