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Protein Overview: gi|17511189

General Information:
Name(s) found: gi|17511189 [NCBI NR]
Description(s) found:
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  • ref|NP_492995.1| VAB-10B protein family member, Variable ABnormal morphology VAB-10 (vab-10) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • VAB-10B protein family member, Variable ABnormal morphology VAB-10 (vab-10) [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE28424 Spectrin repeat (16 domains) status:Partially_confirmed TR:Q95NZ2 protein_id:CAB07725.2 [wormpep80.hongbin]
    • Organism: Caenorhabditis elegans
    Length: 3563 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLTRFRQE IFTTHLTFNS NPESIDAATK NVQNVKQSLD SWRDRIKERL DEIDRLCTEE  60
   61 GDSLTPEQYS ALREMRRQLA DEYDTVLRTV EGIHTRLNIL SALLIEFSSV TSSMQSWMTD 120
  121 RTRLAGDIRH KSGDPMRIDE ARFEAKSLMD EVIREESRLK TIGASVLKIE QEISAMRDDV 180
  181 RASGSTDDVG ISVDEVYETR RRVEDDYMQL LRQCQDLISF QNRLHAMNDE HSEQARRADE 240
  241 WLQMLQNDVE DVDQDPRFQR DEDRIQRIEE LNRMAAGGSS QLDDAEQASR RLLTALEGTN 300
  301 VANDVRARHE ELANLRRGKH QKVIDRLSQN MMEAASRKAE AEGVKQAVEN LRQWSEQTAQ 360
  361 RTRQPVQLPL TELDLHEARK DEQVLHGEIE NRLALIEELE KKAADVGDHA SLAELQECKM 420
  421 KLKRSNSDLK GLRDNIFDAI NGLQTVNSEG ETLSRAVDSA GAKIRSARLP EAQSEVEALQ 480
  481 DQADNLERIT NNLCNIPNVT RTEPVIQKSK DLRKRVDSCA QELDARMGKL AELESLDAEF 540
  541 DGAKNKLSSF IGAFDDELKG LEKVSIDKEK LAEQRRQTQD LVDKHSEGNA ILDDVEAIAQ 600
  601 KVTAEDPSKT GSAQKSVGEL GARLQRQASE LKARGDKINK LDSKATSFAE SEAAVLGYIE 660
  661 KQKDQLSTGF PVPATKEGVK SQLLDLERMN KTGKEEQRRV DDARHSAREL AREASVEKEV 720
  721 QDMNQREKKL LDEWEDLADQ FDAVRSRANK AEQVLNECAQ MEKYIGAKKN MLEGIGAPST 780
  781 EPGVAKANRA QIQSMKAETE GEKSALEHVN SLANELIADG GANVEELMKK MDRLNRKWHS 840
  841 LESGLDENAG RVEEAAKLGQ ELKDIQKELR KELGELESNV EKASAMSSND IGDQLATLDS 900
  901 LKSRFGGVDK ALEKLKGILE ATEELEVDAT NRAEIQEQLE TTQKKADELE RKIENVKKAA 960
  961 LNAQNEGLEL EKKLDELIGT VNSAENELEL AAPIAAESLK LADELKRAEE LFQKLIENEG1020
 1021 DVSLIRAKVA EELKKKPDAE LKKKLELLYQ KWPKALGAAR DRKDLVSKAG DLVKQFGDQV1080
 1081 QALEQRLQGD QAELDELLAS DKAHDPEVCD ALKLVELTMA RRLADVDALN AVMNRIESSA1140
 1141 PGPDANRLRR RADTLSDDAK GMAKKARTAA DLAQRKQGLA KKFERLCDEV SQFTENQKAE1200
 1201 IQDAIEKDLL NAERVQSKLN KIDDFWSSNS RELKNVGDEI KIDATPEDAQ AVDTKLAELQ1260
 1261 AGIDGLLATL QEQNVHLEEK REQANRVQSE SQKAAGKINS LVAEIADLDP IGRSRDELQK1320
 1321 QKKEVVELAG DLGSAQTKML ELGAEWEAAL GAGIVAQPVF EMNRAATDEL NKLAARAGKR1380
 1381 LAQREKKITE TEDEIDKLHA DADQIVGALE AIAKDEALQG APSQLLDPKQ VSEKVRQLKE1440
 1441 SLKPVGEKMD AFNTDCKLLI KTAGPESDTK ELDSLLKKVG DAYSDVVGKV SDKEMSVDAA1500
 1501 VQQQGKVEDA YRALLNWLEE TEEMMENRKK PSADAKVAKA QLHDYEVLMK HVEDKKPSVD1560
 1561 GFKAMIEKIV AEASSDEEKK ALGNKNAQIE DRYKDLLNSA VDRQRKLLDA VDLAERLQEV1620
 1621 TIPLDSWLQS ADKRLQALAK VPITVEKAEE MIGEQEALQD ELEHKSDDLK DVLEIAPMLA1680
 1681 SLVSVEDANS ISGQVNQLEA RARALDAGIT NMRPLLESFL QQIQDFTLDA EDMTQFVGET1740
 1741 EVKLGELDEL PIEPDDLVEQ TNILAEIAVS IADRDEMMAN IFEVGKQLAI QGEPEEALIA1800
 1801 QKKLDDLKFR YADLMTSADE KIALLAKAIP LSEGFHEGFD TVMQVLEDMD RDLQTIDEED1860
 1861 PETQAELIFL LEEDISQKMR PSVDELTALS NQLQVLCSAD KADELQTNTI AMNKLVNSVA1920
 1921 DRVARRAERI EMASKQSRAV LDDLQYLIEW FSAARERILE GAPPSLDLEV LKSQLKHQRI1980
 1981 TNEEASANKV QFRNVAGEAK KVARQLGMEG NEANEKISDT VDEGKELVEE VMALCADRTE2040
 2041 TLERALALME QLTSQFDELN KWLDQMDAEL QASPSVTTAT PAAELREMHD HNEELARMVA2100
 2101 AYRPIIEGFK SDVGSLHEVL AEDQAPLLES VAGELVQGYE EVREAVRARG HAIDNMMGAT2160
 2161 IGFGERLETL VANLQGAADR LRENEGISAD PSVLESRLAE NRSIVESLRD KQNAYDALKQ2220
 2221 TASELLASAP EGDAAAGDVE NKLNRLEKLW KEIEREAVDR GVLLEDVLDK AKHFWSELDS2280
 2281 CQKAVDDLRN RLELVEPATG HPEQLADQQE IMAQVASEME RARPRIEALS IAGKQLADYV2340
 2341 PDDEKAVIEN QVANVRGGFS TITGLFAEKK RDLIAAMEEA MTFHGDLQEL LKWLDMAEQK2400
 2401 LLKMSPVEHA KHMTEIEQLL KELHTFKDEV HERGVAKEQV VATALQLAAD APPHLAATVR2460
 2461 QPVADLNTRW SRLNAALAER EHKLENLMLQ MGKLASTIAQ LTAWMDKTRA TLKDIAPPKN2520
 2521 AVNLRDIEIA QCKLVVLSND IHAHQDSVNA VNRAAQKYIQ TSGALDAETS DSLKSMNLKW2580
 2581 EDIQKVLESL AFDMEVAKKE AENVGGEVEK WQRWLEETES ALLSTKPTGG LPETAEFQLD2640
 2641 EFKALKLDVE HNASPLEAHL HATEQHLKEE PQDADTWLSK THGAMKTKWN KVKELLVDRE2700
 2701 KKLQVAYEQA VALESALNDM EDWIIAAERK LTDQPSISRL PDVIEKQLAE HESWMEEVAG2760
 2761 RKMAMTKHQA SGVHMQYYCE KKDAIPIKNR LVSLKHRVEK ISGRTAERAK QLAVTRDEVA2820
 2821 TWQDGLHDLE HFISDVLVKI APEPNTTSSL EKLKAKLEEV KEAQRDVTAK QTLFDVTRKR2880
 2881 GIGLAERATR SEYKQISMTN EKMSKKWAEM LKKLRDRLRE AEQAVLEGGA FEESMNDLES2940
 2941 WVDDELERYQ KAEHEPVFAD IDGVRALVDE ESRRSAERKT KENGVKTVVK KADALMASGV3000
 3001 DEKDSIAQAK ERLVEKWNQV EEAARHRGNS IKEAEQAAEE FDAKTHALLD WLAVEEQKLK3060
 3061 ASGLDEVEGV KQEMDEAKGR YQECLKKGEE ILSKCQPAAE PILRNWMRVV EARWKEVSEK3120
 3121 VDEREFTLLE QEQKAKEQNE QIEKLAKFAA QKREELNRMI EQPPAQDLDT MEQNICDFAN3180
 3181 LDSELREQQP EVDAACKSAK KGARNPAAEM LSTEWKKLWL DAMGLQSSLD NQKALLEEMK3240
 3241 RLEGWKWEDW KERYVEWNDH AKARVNDLFR RIDRLHTGNV PRQVFIDGII GSKFPTSRLE3300
 3301 MAKVADRFDK GDGMINAKEF INALRFDASN RNAKPQTDTE KITHEIELQK KTCSCCTPYQ3360
 3361 IEKISENHYR FGDTHIKRMV RILRSTVMVR VGGGWESLDE FLHKHDPCRA KGRLNINMFP3420
 3421 EARPIHALDS MRSFTKNRHG KQLPTTGTPG PIMKIREKTD RSVPMSGGLG GTAGYTVTTD3480
 3481 SHRHTDARPS RIPRAPSDMS AGRLSRVGSV SNSKNSIVDS STPSRPESRA SSDAGDRQTR3540
 3541 IPSLRARKGQ RYIPQGPSSS SSK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run knl-1 No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle