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Protein Overview: lin-9

General Information:
Name(s) found: lin-9 / CE28195 [WormBase]
Description(s) found:
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  • WBGene00002998 locus:lin-9 Protein lin-9 status:Partially_confirmed UniProt:P30630 protein_id:CAC42391.1 [WormBase]
  • gi|8515821|gb|AAF76192.1|AF269693_1 LIN-9L [Caenorhabditis elegans] [NCBI NR]
  • gi|71997738|ref|NP_001023016.1| abnormal cell LINeage family member (lin-9) [Caenorhabditis elegans] [NCBI NR]
  • gi|29429174|sp|P30630.3|LIN9_CAEEL RecName: Full=Protein lin-9; AltName: Full=Abnormal cell lineage protein 9 [NCBI NR]
  • ref|NP_498966.1| rb related pathway actor, Rb related pathway actor, associated to synthetic multivulva phenotype, abnormal cell LINeage LIN-9 (73.3 kD) (lin-9) [Caenorhabditis elegans] [NCBI NR]
  • gi|14530697|emb|CAC42391.1| C. elegans protein ZK637.7b, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • Protein lin-9 OS=Caenorhabditis elegans GN=lin-9 PE=1 SV=3 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE28195 WBGene00002998 locus:lin-9 status:Partially_confirmed SW:P30630 protein_id:CAC42391.1 [wormpep150.fasta]
  • 28195 WBGene00002998 locus:lin-9 status:Confirmed SW:P30630 protein_id:CAC42391.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • rb related pathway actor, Rb related pathway actor, associated to synthetic multivulva phenotype, abnormal cell LINeage LIN-9 (73.3 kD) (lin-9) [Caenorhabditis elegans]gi|14530697|emb|CAC42391.1| Hypothetical protein ZK637.7b [Caenorhabditis elegans]gi| [nrdb_11152004_Chlamydomonas]
  • CE28195 WBGene00002998 locus:lin-9 status:Confirmed SW:P30630 protein_id:CAC42391.1 [wormpep132.fasta]
  • 28195 WBGene00002998 locus:lin-9 status:Partially_confirmed SW:P30630 protein_id:CAC42391.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • locus:lin-9 status:Confirmed SW:P30630 protein_id:CAC42391.1 [wormpep115.fasta.reversed]
  • CE28195 status:Confirmed TR:Q9NB38 protein_id:CAC42391.1 [wormpep80.hongbin]
  • CE28195 WBGene00002998 locus:lin-9 status:Partially_confirmed UniProt:P30630 protein_id:CAC42391.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE28195 WBGene00002998 locus:lin-9 status:Partially_confirmed UniProt:P30630 protein_id:CAC42391.1| [wormORF-contam.fasta]
  • Hypothetical protein ZK637.7b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Protein lin-9 (Abnormal cell lineage protein 9) [nr-271106-contam.fasta]
  • LIN-9L [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • abnormal cell LINeage family member (lin-9) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE28195 WBGene00002998 locus:lin-9 status:Partially_confirmed UniProt:P30630 protein_id:CAC42391.1 Protein lin-9 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 644 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: negative regulation of vulval development [IGILink to PubMed articleLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    male gonad development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    tail tip morphogenesis [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    gonad development [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAVRSPRK KAASDTSDPD RTSSPYSLRE TSKVPSRYRN EELYLSPSRS IKRTGSPKKS  60
   61 PAKRLNGGRD SPSVNSLTRN SSLTMLAKAA LDYESSSCAL EYIFQPKEER RPPRRALALS 120
  121 PPPAPSNDLL AKDLEMIEMH QNLVAGLDDL DNPANMTNEA VEHRDTQSFF NMFSTDQERS 180
  181 AMMKQFKTYK NQTSEDVSTF MRANIKKLYN LLRYKKARQW VMCEFFYSAI DEQIFKEENE 240
  241 FATIIRESFP NLKNWNLTRI EWRSIRKLLG KPRRCSKVFF EEERMYLEEK RMKIRSVYEG 300
  301 SYLNDPSIDL KDLPAKLPRP MVVGNRVFAR IRNPYDGIYS GIIDAVIPKG FRIIFDKPDI 360
  361 PPTLVSDTEI LLDGKLDLLS IAYFIEQANS KLPSGVRPFV AAVRDSSHPH LVRDVLVSRK 420
  421 IERSGGPLMG PNDERLNGKN AEMVGNFPLK FLVNLVKLTK LIDIKKGLIR QLNELNADAE 480
  481 IQNMTSDKYS KAFQEKYAKT IIDLEHVNQN IDINMNGIQD HHMYFSSNDI STSNMKPEAV 540
  541 RQMCSQQAGR FVEHCNQGLN VENVHALTLI QSLTAVLLQV RTMGTQKISA VDLQSLGDAI 600
  601 SEIRTAIHPR NVAFFQDYVE VHMKQFHTIM LESGALAGTV SNRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] deduced N/A No confident structure predictions are available.
    2 View Details [191..217] MSA 1.026993 View MSA. No confident structure predictions are available.
    3 View Details [218..371] Pfam 71.744727 No description for PF06584.4 was found. No confident structure predictions are available.
    4 View Details [372..456] deduced N/A No confident structure predictions are available.
    5 View Details [457..644] MSA 1.01993 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle