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Protein Overview: lin-9

General Information:
Name(s) found: lin-9 / CE28194 [WormBase]
Description(s) found:
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  • WBGene00002998 locus:lin-9 Protein lin-9 status:Confirmed UniProt:P30630 protein_id:CAA77454.2 [WormBase]
  • gi|8515823|gb|AAF76193.1|AF269694_1 LIN-9S [Caenorhabditis elegans] [NCBI NR]
  • gi|71997724|ref|NP_001023015.1| abnormal cell LINeage family member (lin-9) [Caenorhabditis elegans] [NCBI NR]
  • ref|NP_498967.1| rb related pathway actor, Rb related pathway actor, associated to synthetic multivulva phenotype, abnormal cell LINeage LIN-9 (73.1 kD) (lin-9) [Caenorhabditis elegans] [NCBI NR]
  • gi|14530698|emb|CAA77454.2| C. elegans protein ZK637.7a, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE28194 WBGene00002998 locus:lin-9 status:Confirmed SW:P30630 protein_id:CAA77454.2 [wormpep150.fasta]
  • 28194 WBGene00002998 locus:lin-9 status:Confirmed SW:P30630 protein_id:CAA77454.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • rb related pathway actor, Rb related pathway actor, associated to synthetic multivulva phenotype, abnormal cell LINeage LIN-9 (73.1 kD) (lin-9) [Caenorhabditis elegans]gi|14530698|emb|CAA77454.2| Hypothetical protein ZK637.7a [Caenorhabditis elegans]gi| [nrdb_11152004_Chlamydomonas]
  • locus:lin-9 status:Confirmed SW:P30630 protein_id:CAA77454.2 [wormpep115.fasta.reversed]
  • CE28194 status:Confirmed SW:P30630 protein_id:CAA77454.2 [wormpep80.hongbin]
  • CE28194 WBGene00002998 locus:lin-9 status:Confirmed UniProt:P30630 protein_id:CAA77454.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE28194 WBGene00002998 locus:lin-9 status:Confirmed UniProt:P30630 protein_id:CAA77454.2| [wormORF-contam.fasta]
  • abnormal cell LINeage family member (lin-9) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • LIN-9S [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein ZK637.7a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE28194 WBGene00002998 locus:lin-9 status:Confirmed UniProt:P30630 protein_id:CAA77454.2 Protein lin-9 [wormpep246-ecoli-contam.fasta]
  • Isoform of P30630, Isoform a of Protein lin-9 OS=Caenorhabditis elegans GN=lin-9 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 642 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: negative regulation of vulval development [IGILink to PubMed articleLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    male gonad development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    tail tip morphogenesis [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    gonad development [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAVRSPRK KAASDTSDPD RTSSPYSLRE TSKVPSRYRN EELYLSPSRS IKRTGSPKKS  60
   61 PAKRLNGGRD SPSVNSLTRN SSLTMLAKAA LDYESSSCAL EYIPKEERRP PRRALALSPP 120
  121 PAPSNDLLAK DLEMIEMHQN LVAGLDDLDN PANMTNEAVE HRDTQSFFNM FSTDQERSAM 180
  181 MKQFKTYKNQ TSEDVSTFMR ANIKKLYNLL RYKKARQWVM CEFFYSAIDE QIFKEENEFA 240
  241 TIIRESFPNL KNWNLTRIEW RSIRKLLGKP RRCSKVFFEE ERMYLEEKRM KIRSVYEGSY 300
  301 LNDPSIDLKD LPAKLPRPMV VGNRVFARIR NPYDGIYSGI IDAVIPKGFR IIFDKPDIPP 360
  361 TLVSDTEILL DGKLDLLSIA YFIEQANSKL PSGVRPFVAA VRDSSHPHLV RDVLVSRKIE 420
  421 RSGGPLMGPN DERLNGKNAE MVGNFPLKFL VNLVKLTKLI DIKKGLIRQL NELNADAEIQ 480
  481 NMTSDKYSKA FQEKYAKTII DLEHVNQNID INMNGIQDHH MYFSSNDIST SNMKPEAVRQ 540
  541 MCSQQAGRFV EHCNQGLNVE NVHALTLIQS LTAVLLQVRT MGTQKISAVD LQSLGDAISE 600
  601 IRTAIHPRNV AFFQDYVEVH MKQFHTIMLE SGALAGTVSN RK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..189] deduced N/A No confident structure predictions are available.
    2 View Details [190..216] MSA 1.026993 View MSA. No confident structure predictions are available.
    3 View Details [217..355] Pfam 71.744727 No description for PF06584.4 was found. No confident structure predictions are available.
    4 View Details [356..523] deduced N/A No confident structure predictions are available.
    5 View Details [524..642] MSA 1.023991 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle