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Protein Overview: rpl-7A

General Information:
Name(s) found: rpl-7A / CE27398 [WormBase]
Description(s) found:
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  • WBGene00004419 locus:rpl-7A 60S ribosomal protein L7a status:Confirmed UniProt:Q966C6 protein_id:CCD71898.1 [WormBase]
  • gi|75020872|sp|Q966C6.3|RL7A_CAEEL RecName: Full=60S ribosomal protein L7a [NCBI NR]
  • gi|32565827|ref|NP_741371.2| Ribosomal Protein, Large subunit family member (rpl-7A) [Caenorhabditis elegans] [NCBI NR]
  • gi|15145440|gb|AAK84600.1|AC006729_4 Ribosomal protein, large subunit protein 7A, isoform a, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • 60S ribosomal protein L7a OS=Caenorhabditis elegans GN=rpl-7A PE=1 SV=3 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE27398 WBGene00004419 locus:rpl-7A status:Confirmed TR:Q966C6 protein_id:AAK84600.1 [wormpep150.fasta]
  • 27398 WBGene00004419 locus:rpl-7A status:Confirmed TR:Q966C6 protein_id:AAK84600.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • ribosomal protein L7Ae/L30e/S12e/Gadd45 (30.2 kD) (4F154) [Caenorhabditis elegans]gi|15145440|gb|AAK84600.1| Ribosomal protein, large subunit protein 7A, isoform a [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Confirmed TR:Q966C6 protein_id:AAK84600.1 [wormpep115.fasta.reversed]
  • CE27398 status:Confirmed TR:Q966C6 protein_id:AAK84600.1 [wormpep80.hongbin]
  • CE27398 WBGene00004419 locus:rpl-7A status:Confirmed UniProt:RL7A_CAEEL protein_id:AAK84600.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE27398 WBGene00004419 locus:rpl-7A status:Confirmed UniProt:RL7A_CAEEL protein_id:AAK84600.1| [wormORF-contam.fasta]
  • CE27398 WBGene00004419 locus:rpl-7A status:Confirmed SW:Q966C6 protein_id:AAK84600.1 [wormpep160-contam.fasta]
  • Ribosomal protein, large subunit protein 7A, isoform a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Ribosomal Protein, Large subunit family member (rpl-7A) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • 60S ribosomal protein L7a [nr-271106-contam.fasta]
  • CE27398 WBGene00004419 locus:rpl-7A status:Confirmed UniProt:Q966C6 protein_id:AAK84600.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE27398 WBGene00004419 locus:rpl-7A status:Confirmed UniProt:Q966C6 protein_id:CCD71898.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE27398 WBGene00004419 locus:rpl-7A status:Confirmed UniProt:Q966C6 protein_id:CCD71898.1 60S ribosomal protein L7a [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 265 amino acids

    Gene Ontology:
    Cellular Component: ribonucleoprotein complex [IEALink to PubMed article]
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    ribosome biogenesis [IEALink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: calmodulin binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSKKVIKKK VAAVPAHIRA QTQVQKEVKN PLFEKRARNF NIGQDIQPKK DVTRFVKWPK  60
   61 YIRLQRQSAI LQKRLKVPPT INQFRTALDS QSARQAFKLL DKYRPESTEA KKNRLRARAE 120
  121 ARAAGKKEEV TKRPNTVRHG VNTITRLVET RRAQLVLIAH DVNPLEIVLH LPALCRKYNV 180
  181 PYAIIKGKAS LGTVVRRKTT AAVALVDVNP EDKSALNKLV ETVNNNFSER HEEIRKHWGG 240
  241 GVMSAKSDAK KLKIERARAR DLGKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..104] MSA 6.118984 View MSA. No confident structure predictions are available.
    2 View Details [105..265] PSI-BLAST 20.0 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.59

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle