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Protein Overview: gpn-1

General Information:
Name(s) found: gpn-1 / CE26816 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00001687 locus:gpn-1 status:Partially_confirmed UniProt:G5EGU4 protein_id:CAB04542.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 543 amino acids

    Gene Ontology:
    Cellular Component: proteinaceous extracellular matrix [IEALink to PubMed article]
    Biological Process: neuron migration [IGI][IMP]
    nematode larval development [IGI]
    epidermis morphogenesis [IGI]
    embryonic development ending in birth or egg hatching [IGI]
    Molecular Function: heparan sulfate proteoglycan binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSDTLAWLL ILLLAMPQET HGFYFTRRDI HGVMCSSSFE DQCTMEERSR LQTNTVDMLT  60
   61 RKHQDRVIVI RSFLTSQIRI FNEFFSKTLR TVHMDLDLMF SKTYGSFYQE NIQLLNDFFK 120
  121 KIKGFSVSFA ETSMKTIVEL FFDELFQVMF SIANPFYSIT NDQRVCMESF YREIEAFDDI 180
  181 PQKIVNQLSL PLSNWKHFLG SLESLNGILE GYLNITFKEE CERGLTRMET CAQCQRISEK 240
  241 PCQAYCVNIL SGCTHQMLDS EGAWRAATES MIKLGNQLNH RQNLVSALQP IPVLISEAIM 300
  301 HFQEKRDYIT NKMIGKCLLN NEDFGLRKKR SAKFKAFPVI TTKRSRDHLI LNQMFQSFAN 360
  361 KMDEWKVFFG NLPEYLCRGE DWASKEDERC WNGTGVGEYK LPLVNYTNPF SNPEYQGTDF 420
  421 LTFRGNYIEE RLRLHWLHSR ISHILSGKDS QKSEAYYSHK AEARIQSDDE DYSDYEYESS 480
  481 GNFPGSGSYM SSKREYSPYF RKHDDKIEIV IEPYPVISTS RKHFHSFVIV IFMLFSALFQ 540
  541 CSR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..82] MSA 4.056994 View MSA. No confident structure predictions are available.
    2 View Details [83..228] MSA 1.07299 View MSA. No confident structure predictions are available.
    3 View Details [229..384] MSA 2.077966 View MSA. No confident structure predictions are available.
    4 View Details [385..543] MSA 4.050989 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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