YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: baf-1

General Information:
Name(s) found: baf-1 / CE26704 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00000235 locus:baf-1 Barrier-to-autointegration factor 1 status:Confirmed UniProt:Q03565 protein_id:CAA79543.2 [WormBase]
  • gi|22096332|sp|Q03565.3|BAF1_CAEEL RecName: Full=Barrier-to-autointegration factor 1 [NCBI NR]
  • gi|17551886|ref|NP_499085.1| Barrier to Autointegration Factor family member (baf-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|13548305|emb|CAA79543.2| C. elegans protein B0464.7, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|12276035|gb|AAG50230.1|AF303272_1 barrier-to-autointegration factor [Caenorhabditis elegans] [NCBI NR]
  • Barrier-to-autointegration factor 1 OS=Caenorhabditis elegans GN=baf-1 PE=1 SV=3 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE26704 WBGene00000235 locus:baf-1 barrier-to-autointegration factor status:Confirmed SW:Q03565 protein_id:CAA79543.2 [wormpep150.fasta]
  • 26704 WBGene00000235 locus:baf-1 barrier-to-autointegration factor status:Confirmed SW:Q03565 protein_id:CAA79543.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • barrier to Autointegration Factor (10.0 kD) (baf-1) [Caenorhabditis elegans]gi|13548305|emb|CAA79543.2| Hypothetical protein B0464.7 [Caenorhabditis elegans]gi|12276035|gb|AAG50230.1| barrier-to-autointegration factor [Caenorhabditis elegans]gi|2209633 [nrdb_11152004_Chlamydomonas]
  • locus:baf-1 barrier-to-autointegration factor status:Confirmed SW:Q03565 protein_id:CAA79543.2 [wormpep115.fasta.reversed]
  • CE26704 barrier-to-autointegration factor status:Confirmed SW:Q03565 protein_id:CAA79543.2 [wormpep80.hongbin]
  • CE26704 WBGene00000235 locus:baf-1 barrier-to-autointegration factor status:Confirmed UniProt:Q03565 protein_id:CAA79543.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE26704 WBGene00000235 locus:baf-1 barrier-to-autointegration factor status:Confirmed UniProt:Q03565 protein_id:CAA79543.2| [wormORF-contam.fasta]
  • barrier-to-autointegration factor [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Barrier to Autointegration Factor family member (baf-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Barrier-to-autointegration factor 1 [nr-271106-contam.fasta]
  • Hypothetical protein B0464.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE26704 WBGene00000235 locus:baf-1 status:Confirmed UniProt:Q03565 protein_id:CAA79543.2 Barrier-to-autointegration factor 1 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 89 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Biological Process: embryonic cleavage [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    chromosome organization [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed article]
    chromosome segregation [IMPLink to PubMed article]
    pronuclear envelope synthesis [IMPLink to PubMed article]
    nucleus organization [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]
    identical protein binding [ISSLink to PubMed article]
    double-stranded DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSVKHREF VGEPMGDKEV TCIAGIGPTY GTKLTDAGFD KAYVLFGQYL LLKKDEDLFI  60
   61 EWLKETAGVT ANHAKTAFNC LNEWADQFM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..89] PSI-BLAST 47.0 Barrier-to-autointegration factor, BAF

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.04668306874326 bayes_pls_golite062009
  • DNA binding
    		•  1.71225698697944 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.68436311270395 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle