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Protein Overview: hrpf-1

General Information:
Name(s) found: hrpf-1 / CE26020 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00020936 locus:hrpf-1 status:Confirmed UniProt:Q9BIB7 protein_id:CCD68995.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 549 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTAYEVQCR GLPWEATEQE LRDFFGNNGI ESLEIPRRNG RTSGDAKVVF TNEEDYNNAL  60
   61 KKDREHLGSR YIEVFPAGGA PTRRGDRGER GDRGDRDHYR SRGAPPRDRY SDRGGPRSSG 120
  121 PDSIVRLRGL PFSVTSRDIS DFLAPLPIVR DGILLPDQQR ARPGGEAYVC FETMESVQIA 180
  181 KQRHMKNIGH RYIEVFEATH RDLSRFAEEN DLRVPRFGPP PFASAPQTAP RGAYDPYSQP 240
  241 TDPYRNATDY RRAAEPEDPY ARSRAPSVQD YGVRASYDPY TQPAAPVSSY PSQQQPSAGY 300
  301 YDNYAPKTAY ESYGRERGPD PRDVRDPRDS RMPDPRDSRA LSDPYAAESR YSEYGYESRE 360
  361 PYWRGGSGGP PSIGGGVGGG GAPLAPTGRD PYSVGESWAN GAGGPGGPPP VSSDRDRYGS 420
  421 GGYASEPYAQ REAGGAMRRS EYGRPDDRYS KPEPYGYSRD RDYGAPQNQH FVLRMRGVPF 480
  481 RASEADVYDF FHPIRPNQVE LLRDHQFQRP SGDARVIFYN RKDYDDALMK DKQYMGERYI 540
  541 EMIPDNGRY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..217] PSI-BLAST 37.69897 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    2 View Details [218..371] deduced N/A No confident structure predictions are available.
    3 View Details [372..549] PSI-BLAST 10.69897 No description for 2f3jA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle