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Protein Overview: rpl-1

General Information:
Name(s) found: rpl-1 / CE25552 [WormBase]
Description(s) found:
Found 22 descriptions.
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  • WBGene00004412 locus:rpl-1 60S ribosomal protein L10a status:Confirmed UniProt:Q9N4I4 protein_id:CCD73507.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 216 amino acids

    Gene Ontology:
    Cellular Component: large ribosomal subunit [IEALink to PubMed article]
    ribosome [IEALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: nematode larval development [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    growth [IMPLink to PubMed articleLink to PubMed article]
    translation [IEALink to PubMed article]
    Molecular Function: RNA binding [IEALink to PubMed article]
    structural constituent of ribosome [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVSRESLN EAIAEVLKGS SEKPRKFRET IELQIGLKNY DPQKDKRFSG SIRLKHIPRP  60
   61 NMKVCVFGDQ HHLDEAAAGD IPSMSADDLK KLNKQKKLIK KLAKSYDAFI ASESLIKQIP 120
  121 RILGPGLNKA GKFPSVVTHG ESLQSKSDEI RATVKFQMKK VLCLSVAVGH VGLTQEELVS 180
  181 NISLSINFLV SLLKKNWQNV RSLNIKSTMG KPQRVY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..216] PSI-BLAST 53.0 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle