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Protein Overview: byn-1

General Information:
Name(s) found: byn-1 / CE25013 [WormBase]
Description(s) found:
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  • WBGene00000276 locus:byn-1 Cell adhesion protein byn-1 status:Confirmed UniProt:Q20932 protein_id:CCD70312.1 [WormBase]
  • gi|21431951|sp|Q20932.2|BYN1_CAEEL RecName: Full=Cell adhesion protein byn-1 [NCBI NR]
  • gi|17553722|ref|NP_498510.1| mammalian BYstiN (adhesion protein) related family member (byn-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|14916333|gb|AAA21176.2| Mammalian bystin (adhesion protein) related protein 1, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • (Q20932) Hypothetical protein F57B9.5 in chromosome III [Swiss-Prot]
  • Cell adhesion protein byn-1 OS=Caenorhabditis elegans GN=byn-1 PE=3 SV=2 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE25013 WBGene00000276 locus:byn-1 status:Confirmed SW:Q20932 protein_id:AAA21176.2 [wormpep150.fasta]
  • 25013 WBGene00000276 locus:byn-1 status:Confirmed SW:Q20932 protein_id:AAA21176.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • bystin (51.6 kD) (3I25) [Caenorhabditis elegans]gi|14916333|gb|AAA21176.2| Mammalian bystin (adhesion protein) related protein 1 [Caenorhabditis elegans]gi|21431951|sp|Q20932|YMG5_CAEEL Hypothetical protein F57B9.5 in chromosome III [nrdb_11152004_Chlamydomonas]
  • locus:byn-1 status:Confirmed SW:Q20932 protein_id:AAA21176.2 [wormpep115.fasta.reversed]
  • CE25013 status:Confirmed SW:Q20932 protein_id:AAA21176.2 [wormpep80.hongbin]
  • CE25013 WBGene00000276 locus:byn-1 status:Confirmed UniProt:Q20932 protein_id:AAA21176.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE25013 WBGene00000276 locus:byn-1 status:Confirmed UniProt:Q20932 protein_id:AAA21176.2| [wormORF-contam.fasta]
  • Cell adhesion protein byn-1 [nr-271106-contam.fasta]
  • mammalian BYstiN (adhesion protein) related family member (byn-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Mammalian bystin (adhesion protein) related protein 1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE25013 WBGene00000276 locus:byn-1 status:Confirmed UniProt:Q20932 protein_id:CCD70312.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE25013 WBGene00000276 locus:byn-1 status:Confirmed UniProt:Q20932 protein_id:CCD70312.1 Cell adhesion protein byn-1 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 449 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed articleLink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    growth [IMPLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKRNLKGRG DKLSANAPLD NQLEAGKVAK QRDELREKQK RKREDSQTDE FVPDSLSSKI  60
   61 LNEARKQLLE EALERQETES ATSSVPKRQR GAWLGADASG DKSDDDDDDN EEEDDNGFED 120
  121 QVVELDPRDE ADLARFLKKD AIQMSTLYDI IQAKIEAKQN DAELALSQVD PNEFNMRDMD 180
  181 PEVVEMYEQI GQYMSKYRSG KVPKAFKIIP KMINWEQILF LTKPETWTAA AMYQATRLFA 240
  241 SNMNPKMCQR FYTLVLLPRL RDDIDEFKKL NYHLYQALCK AIYKPAAFFK GLILPLLESG 300
  301 TCTLREAVIF SSVLTKVPIP IFHSAAAMLR IAEMEYTGAN SVFLRALIDK KYALPYRAVD 360
  361 GVVNHFIRLK TDERDMPVLW HQCLLALCQR YKNDLNAEQK AAIYELIRFH GHYLISPEIR 420
  421 RELESKETED GHVITSVVVE GRKTDSMEF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] MSA 3.043985 View MSA. No confident structure predictions are available.
    2 View Details [142..449] FFAS03 1.19 No description for 2ilrA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle