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Protein Overview: CE23663

General Information:
Name(s) found: CE23663 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00008877 tRNA-splicing ligase RtcB homolog status:Partially_confirmed UniProt:P90838 protein_id:CAB04121.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 505 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: male genitalia development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRTFEEECD FIDRLTDTKF RIKKGFVPNM NVEGRFYVNN SLEQLMFDEL KFSCDGQGIG  60
   61 GFLPAVRQIA NVASLPGIVG HSIGLPDIHS GYGFSIGNIA AFDVGNPESV ISPGGVGFDI 120
  121 NCGVRLLRTN LFEENVKPLK EQLTQSLFDH IPVGVGSRGA IPMLASDLVE CLEMGMDWTL 180
  181 REGYSWAEDK EHCEEYGRML QADASKVSLR AKKRGLPQLG TLGAGNHYAE VQVVDEIYDK 240
  241 HAASTMGIDE EGQVVVMLHC GSRGLGHQVA TDSLVEMEKA MARDGIVVND KQLACARINS 300
  301 VEGKNYFSGM AAAANFAWVN RSCITFCVRN AFQKTFGMSA DDMDMQVIYD VSHNVAKMEE 360
  361 HMVDGRPRQL CVHRKGATRA FPAHHPLIPV DYQLIGQPVL IGGSMGTCSY VLTGTEQGLV 420
  421 ETFGTTCHGA GRALSRAKSR RTITWDSVID DLKKKEISIR IASPKLIMEE APESYKNVTD 480
  481 VVDTCDAAGI SKKAVKLRPI AVIKG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..505] PSI-BLAST 1000.0 Hypothetical Extein Protein of PH1602 from Pyrococcus horikoshii

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.821374663778173 bayes_pls_golite062009
  • protein binding
    		•  0.141714040355612 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle