Protein Overview: snr-6

General Information:
Name(s) found:	snr-6 / CE22230 [WormBase]
Description(s) found: SHOW ONLY BEST	WBGene00004919 locus:snr-6 Probable small nuclear ribonucleoprotein E status:Confirmed UniProt:Q9XTU6 protein_id:CAB11551.1 [WormBase] pir\|\|T27041 hypothetical protein Y49E10.15 - Caenorhabditis elegans [NCBI NR] gi\|3979991\|emb\|CAB11551.1\| C. elegans protein Y49E10.15, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR] gi\|29428070\|sp\|Q9XTU6.1\|RUXE_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein E; Short=snRNP-E; Short=Sm protein E; Short=Sm-E; Short=SmE [NCBI NR] gi\|17556060\|ref\|NP_499620.1\| Small Nuclear Ribonucleoprotein family member (snr-6) [Caenorhabditis elegans] [NCBI NR] Probable small nuclear ribonucleoprotein E OS=Caenorhabditis elegans GN=snr-6 PE=3 SV=1 [Swiss-Prot] [wormpep67.fasta] CE22230 WBGene00004919 locus:snr-6 status:Partially_confirmed SW:Q9XTU6 protein_id:CAB11551.1 [wormpep150.fasta] 22230 WBGene00004919 locus:snr-6 status:Partially_confirmed SW:Q9XTU6 protein_id:CAB11551.1 [wormpep130-phg-ecoli-orf-rand.fasta] small nuclear ribonucleoprotein, small nuclear ribonucleoprotein SNR-6 (snr-6) [Caenorhabditis elegans]gi\|3979991\|emb\|CAB11551.1\| Hypothetical protein Y49E10.15 [Caenorhabditis elegans]gi\|7510035\|pir\|\|T27041 hypothetical protein Y49E10.15 - Caenorhabdit [nrdb_11152004_Chlamydomonas] locus:snr-6 status:Partially_confirmed SW:Q9XTU6 protein_id:CAB11551.1 [wormpep115.fasta.reversed] CE22230 status:Confirmed TR:Q9XTU6 protein_id:CAB11551.1 [wormpep80.hongbin] CE22230 WBGene00004919 locus:snr-6 status:Partially_confirmed UniProt:RUXE_CAEEL protein_id:CAB11551.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta] CE22230 WBGene00004919 locus:snr-6 status:Partially_confirmed UniProt:RUXE_CAEEL protein_id:CAB11551.1\| [wormORF-contam.fasta] Probable small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E) (Sm-E) (SmE) [nr-271106-contam.fasta] Hypothetical protein Y49E10.15 [Caenorhabditis elegans] [nr-271106-contam.fasta] Small Nuclear Ribonucleoprotein family member (snr-6) [Caenorhabditis elegans] [nr-271106-contam.fasta] CE22230 WBGene00004919 locus:snr-6 status:Confirmed SW:Q9XTU6 protein_id:CAB11551.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta] [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr] CE22230 WBGene00004919 locus:snr-6 status:Confirmed UniProt:Q9XTU6 protein_id:CAB11551.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta] CE22230 WBGene00004919 locus:snr-6 status:Confirmed UniProt:Q9XTU6 protein_id:CAB11551.1 Probable small nuclear ribonucleoprotein E [wormpep246-ecoli-contam.fasta]
Organism:	Caenorhabditis elegans
Length:	90 amino acids
Gene Ontology:
Cellular Component:	ribonucleoprotein complex [IEA]
Biological Process:	mRNA metabolic process [IEA] locomotory behavior [IMP] nematode larval development [IMP] embryonic development ending in birth or egg hatching [IMP ] reproduction [IMP] growth [IMP]
Molecular Function:	NONE FOUND

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MSTRKLNKVM VQPVNLIFRY LQNRTRVQIW LYEDVTHRLE GYIIGFDEFM NVVFDEAEEV 60 61 NMKTKGRNKI GRILLKGDNI TLIHAAQQEA

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	hcp-1	hcp1 IP from december2004	Cheeseman, I.M., et al. (2005)
View Run	hcp-2	hcp2 ip from december	Cheeseman, I.M., et al. (2005)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..90]	PSI-BLAST	17.522879	Archaeal homoheptameric Sm protein

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
	9.36615441177233	bayes_pls_golite062009
RNA binding	5.81718051012035	bayes_pls_golite062009
nucleic acid binding	2.69031444148163	bayes_pls_golite062009
mRNA binding	2.57166143288861	bayes_pls_golite062009
binding	2.44117021254507	bayes_pls_golite062009
protein binding	0.318488892917007	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle