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Protein Overview: pfn-1

General Information:
Name(s) found: pfn-1 / CE21418 [WormBase]
Description(s) found:
Found 23 descriptions.
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  • WBGene00003989 locus:pfn-1 Profilin-1 status:Confirmed UniProt:Q9XW16 protein_id:CAA22318.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 132 amino acids

    Gene Ontology:
    Cellular Component: actin cytoskeleton [IEALink to PubMed article]
    Biological Process: embryonic cleavage [IMPLink to PubMed articleLink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    cytoskeleton organization [IEALink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    cytokinesis [IMPLink to PubMed articleLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    Molecular Function: actin binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGWNAYIDT MTAAAPSIKR CAIVGAADGS VWARTEADNV FKASEEELKT FVALFNDVTQ  60
   61 VPAKGADIEG VHYVVPRTEE SLIFGKKENT GFFAVKTKSA VLIAVYEGPN EVAAQVRKAV 120
  121 ESMQTYLNNA GY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] PSI-BLAST 45.30103 Profilin (actin-binding protein)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • actin binding
    		•  7.981958446142 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  6.51470611165788 bayes_pls_golite062009
  • actin monomer binding
    		•  3.80837480536839 bayes_pls_golite062009
  • binding
    		•  3.26636517628678 bayes_pls_golite062009
  • phosphatidylinositol-4,5-bisphosphate binding
    		•  3.24248939295046 bayes_pls_golite062009
  • protein binding
    		•  2.14534188091242 bayes_pls_golite062009
  • phosphoinositide binding
    		•  1.69872978885701 bayes_pls_golite062009
  • phospholipid binding
    		•  1.52027694872856 bayes_pls_golite062009
  • transporter activity
    		•  1.434681455285 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.23300160340736 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.490905558612378 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle