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Protein Overview: mex-5

General Information:
Name(s) found: mex-5 / CE21237 [WormBase]
Description(s) found:
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  • WBGene00003230 locus:mex-5 Zinc finger protein mex-5 status:Confirmed UniProt:Q9XUB2 protein_id:CAB05310.1 [WormBase]
  • pir||T26081 hypothetical protein W02A2.7 - Caenorhabditis elegans [NCBI NR]
  • gi|55976631|sp|Q9XUB2.1|MEX5_CAEEL RecName: Full=Zinc finger protein mex-5 [NCBI NR]
  • gi|4008408|emb|CAB05310.1| C. elegans protein W02A2.7, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17541622|ref|NP_502566.1| Muscle EXcess family member (mex-5) [Caenorhabditis elegans] [NCBI NR]
  • Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE21237 WBGene00003230 locus:mex-5 Zinc finger C-x8-C-x5-C-x3-H type (and similar). status:Confirmed SW:Q9XUB2 protein_id:CAB05310.1 [wormpep150.fasta]
  • 21237 WBGene00003230 locus:mex-5 Zinc finger C-x8-C-x5-C-x3-H type (and similar). status:Confirmed TR:Q9XUB2 protein_id:CAB05310.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • C-x8-C-x5-C-x3-H type zinc finger containing protein family member, Muscle EXcess MEX-5 (52.8 kD) (mex-5) [Caenorhabditis elegans]gi|4008408|emb|CAB05310.1| Hypothetical protein W02A2.7 [Caenorhabditis elegans]gi|7508800|pir||T26081 hypothetical protein [nrdb_11152004_Chlamydomonas]
  • CE21237 WBGene00003230 locus:mex-5 Zinc finger C-x8-C-x5-C-x3-H type (and similar). status:Confirmed TR:Q9XUB2 protein_id:CAB05310.1 [wormpep132.fasta]
  • 21237 WBGene00003230 locus:mex-5 Zinc finger C-x8-C-x5-C-x3-H type (and similar). status:Confirmed SW:Q9XUB2 protein_id:CAB05310.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • locus:mex-5 Zinc finger C-x8-C-x5-C-x3-H type (and similar). status:Partially_confirmed TR:Q9XUB2 protein_id:CAB05310.1 [wormpep115.fasta.reversed]
  • CE21237 locus:mex-5 Zinc finger C-x8-C-x5-C-x3-H type (and similar). status:Partially_confirmed TR:Q9XUB2 protein_id:CAB05310.1 [wormpep80.hongbin]
  • CE21237 WBGene00003230 locus:mex-5 Zinc finger C-x8-C-x5-C-x3-H type (and similar). status:Confirmed UniProt:Q9XUB2 protein_id:CAB05310.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE21237 WBGene00003230 locus:mex-5 Zinc finger C-x8-C-x5-C-x3-H type (and similar). status:Confirmed UniProt:Q9XUB2 protein_id:CAB05310.1| [wormORF-contam.fasta]
  • Hypothetical protein W02A2.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Muscle EXcess family member (mex-5) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Zinc finger protein mex-5 [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE21237 WBGene00003230 locus:mex-5 status:Confirmed UniProt:Q9XUB2 protein_id:CAB05310.1 Zinc finger protein mex-5 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 468 amino acids

    Gene Ontology:
    Cellular Component: centrosome [IDALink to PubMed article]
    Biological Process: nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAASNSVSS AGGSVSPTTT QPPLPPGQSS HPQIYDQQMQ YYFAAAMPNQ PMATYAAQNG  60
   61 SSQQYAPAAP YYQDANGQYV QVPANGSMAP QQHMMVSGQP YLYMAQPQQG AQQVMQSGQP 120
  121 QLIYYQQSMA PQAAPMYFHP MQAAPMLPEQ MGVMPHTQPA IPPQQQPRQV GVEISSTRTA 180
  181 PLTSSTPLPT SLEYETVQRD NRNRNIQFRY HRVMEHDELP IDEISKITLD NHNDDTMSAE 240
  241 KENHFHEHRG EKFGRRGFPI PETDSQQPPN YKTRLCMMHA SGIKPCDMGA RCKFAHGLKE 300
  301 LRATDAPARY PNNKYKTKLC KNFARGGTGF CPYGLRCEFV HPTDKEFQNI PPYQRMSHDD 360
  361 QDYDQDVIPE DYVVARHQPR FMRTGGRATT PTKVMLKHRN VAGSMMCLSN AGRDLQAGGD 420
  421 YNQPESNEDD LPPHLRRNRR ENPPMNKRRT SLSTKWTSEE NLGLRGHY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..179] PSI-BLAST 6.69897 Sec24
    2 View Details [180..267] deduced N/A No confident structure predictions are available.
    3 View Details [268..375] PSI-BLAST 24.69897 Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d
    4 View Details [376..468] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.51

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle