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Protein Overview: CE20215

General Information:
Name(s) found: CE20215 [WormBase]
Description(s) found:
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  • WBGene00012551 locus:cec-7 status:Confirmed UniProt:Q9XWW0 protein_id:CAA21530.1 [WormBase]
  • pir||T26629 hypothetical protein Y37D8A.11 - Caenorhabditis elegans [NCBI NR]
  • gi|71992950|ref|NP_001022827.1| hypothetical protein Y37D8A.11 [Caenorhabditis elegans] [NCBI NR]
  • gi|3925202|emb|CAA21530.1| C. elegans protein Y37D8A.11a, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • ref|NP_499677.1| putative nuclear protein (54.8 kD) (3N966) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE20215 WBGene00012551 status:Confirmed TR:Q9XWW0 protein_id:CAA21530.1 [wormpep150.fasta]
  • 20215 WBGene00012551 status:Confirmed TR:Q9XWW0 protein_id:CAA21530.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative nuclear protein (54.8 kD) (3N966) [Caenorhabditis elegans]gi|3925202|emb|CAA21530.1| Hypothetical protein Y37D8A.11a [Caenorhabditis elegans]gi|7509558|pir||T26629 hypothetical protein Y37D8A.11 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Confirmed TR:Q9XWW0 protein_id:CAA21530.1 [wormpep115.fasta.reversed]
  • CE20215 status:Partially_confirmed TR:Q9XWW0 protein_id:CAA21530.1 [wormpep80.hongbin]
  • CE20215 WBGene00012551 status:Confirmed UniProt:Q9XWW0_CAEEL protein_id:CAA21530.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE20215 WBGene00012551 status:Confirmed UniProt:Q9XWW0_CAEEL protein_id:CAA21530.1| [wormORF-contam.fasta]
  • Y37D8A.11a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein Y37D8A.11a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE20215 WBGene00012551 status:Confirmed UniProt:Q9XWW0 protein_id:CAA21530.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE20215 WBGene00012551 locus:cec-7 status:Confirmed UniProt:Q9XWW0 protein_id:CAA21530.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • C.Elegans Chromodomain protein OS=Caenorhabditis elegans GN=cec-7 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 499 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    chromatin [IEALink to PubMed article]
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed article]
    chromatin assembly or disassembly [IEALink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: chromatin binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPNRTPKQN FAIGEDITCV YKTHPYDATI IGIENNREGK ECYCVHFKGW NCRYDEKIVI  60
   61 GEEKDRIFKG TVEDYYKKSH KTVVTAVVAG KQKQTASSSA DSNGTSSGAT EKAAKAPAAT 120
  121 MRKSAKKVDE SSSEAADPKA KAEESSQNAL KVDPPLTTRK SSRTTTEATG AMKRLTVAQE 180
  181 TEDEAPKETV QKKARIEPVD SAEESKAKGS TAPMRKSAKK VGESNSEATD PEAKAKESSQ 240
  241 SALKVEPPLT THNSSRKTVE ATGAMKRLTV AKETEDEALK SQKKARIEPV EDASKAKGSA 300
  301 APKSASSRAE DGESSSTNDA AGTRFVIGEL VACTYKGKVY DAVITDIKPD KDGKECYCIH 360
  361 FKGWNNRYDE QIPIGEETDR IFKGIADGYR APVVTMRKSA RNHEKSTEPQ ATKENAPRLV 420
  421 GKRREQFIIG EQVTCTQNGK PYDAYIVDII TDTDGKDFYC VHFKGWNSRY DEKIPVGEEQ 480
  481 GRLFKGSAAK YAEMLEMKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..171] PSI-BLAST 14.39794 No description for 2f5kA was found.
    2 View Details [172..382] deduced N/A No confident structure predictions are available.
    3 View Details [383..499] FFAS03 2.77 No description for 2f5kA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.29119158874597 bayes_pls_golite062009
  • protein binding
    		•  0.92128574628879 bayes_pls_golite062009
  • chromatin binding
    		•  0.389299268964469 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  1.18516426886327 bayes_pls_golite062009
  • protein binding
    		•  0.807718911069571 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle