Protein Overview: npp-9

General Information:
Name(s) found:	npp-9 / CE17939 [WormBase]
Description(s) found: SHOW ONLY BEST	WBGene00003795 locus:npp-9 status:Confirmed UniProt:Q21021 protein_id:CAA84330.1 [WormBase] pir\|\|T22974 hypothetical protein F59A2.1 - Caenorhabditis elegans [NCBI NR] gi\|3877856\|emb\|CAA84330.1\| C. elegans protein F59A2.1a, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR] gi\|17553754\|ref\|NP_497703.1\| Nuclear Pore complex Protein family member (npp-9) [Caenorhabditis elegans] [NCBI NR] [wormpep67.fasta] CE17939 WBGene00003795 locus:npp-9 Nucleoporin status:Confirmed TR:Q21021 protein_id:CAA84330.1 [wormpep150.fasta] 17939 WBGene00003795 locus:npp-9 Nucleoporin status:Confirmed TR:Q21021 protein_id:CAA84330.1 [wormpep130-phg-ecoli-orf-rand.fasta] RanBP1 domain containing protein, Nuclear Pore complex Protein NPP-9 (92.9 kD) (npp-9) [Caenorhabditis elegans]gi\|3877856\|emb\|CAA84330.1\| Hypothetical protein F59A2.1a [Caenorhabditis elegans]gi\|7504712\|pir\|\|T22974 hypothetical protein F59A2.1 - Caenorh [nrdb_11152004_Chlamydomonas] locus:npp-9 Nucleoporin status:Confirmed TR:Q21021 protein_id:CAA84330.1 [wormpep115.fasta.reversed] CE17939 locus:npp-9 Nucleoporin status:Confirmed TR:Q21021 protein_id:CAA84330.1 [wormpep80.hongbin] CE17939 WBGene00003795 locus:npp-9 Nucleoporin status:Confirmed UniProt:Q21021_CAEEL protein_id:CAA84330.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta] CE17939 WBGene00003795 locus:npp-9 Nucleoporin status:Confirmed UniProt:Q21021_CAEEL protein_id:CAA84330.1\| [wormORF-contam.fasta] F59A2.1a [Caenorhabditis elegans] [nr-271106-contam.fasta] Hypothetical protein F59A2.1a [Caenorhabditis elegans] [nr-271106-contam.fasta] CE17939 WBGene00003795 locus:npp-9 Nucleoporin status:Confirmed UniProt:Q21021 protein_id:CAA84330.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta] [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr] CE17939 WBGene00003795 locus:npp-9 status:Confirmed UniProt:Q21021 protein_id:CAA84330.1 [wormpep246-ecoli-contam.fasta] Isoform of Q86G90, Nuclear Pore complex Protein OS=Caenorhabditis elegans GN=npp-9 PE=1 SV=2 [CAEEL.fasta.20160308]
Organism:	Caenorhabditis elegans
Length:	860 amino acids
Gene Ontology:
Cellular Component:	intracellular [IEA]
Biological Process:	collagen and cuticulin-based cuticle attachment to epithelium [IMP] hermaphrodite genitalia development [IMP ] intracellular transport [IEA] embryonic development ending in birth or egg hatching [IMP ] reproduction [IMP]
Molecular Function:	zinc ion binding [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQKPNMGR IVASVVDVQQ LMTMQFDSLI KSMDSLKIEH QTGVTQLRDD IRRSEDRFQK  60
   61 QLSDLSTNHG KELERLHQII HTLLARDANP LGSMIPPQQL QQQQQMLILQ RQMEMAHVQA 120
  121 AQAQAHAHAQ AQAQAQAQSQ VMANLLNAAK PAIPVTQPLV ATTAQAKSTV PASGVIAPKT 180
  181 SPPEVVIPPA KPTFSTPTPA VVPKPATTGF SFGGTNPATS IFGKKPETAS PVVVPAAKDD 240
  241 EDEEHDEDYE PEGEFKPVIP LPDLVEVKTG EEGEQTMFCN RSKLYIYANE TKEWKERGTG 300
  301 ELKVLYNKDK KSWRVVMRRD QVLKVCANFP ILGSMTIQQM KSNEKAYTWF CEDFSEDQPA 360
  361 HVKLSARFAN VDIAGEFKTL FEKAVAEAKS SSNAGKTIDK EIKPAAEVKK EVKQEVVIPS 420
  421 NNKPEETGFG DQFKPKPGSW ECPGCYVTCK ADEIECACCG TSKDGSVKEK NIFSKPSILQ 480
  481 PAPGTPKVTF GFGASAPAKE PLAQTSQFGG SLSGSPSTSS SIFGGGTPKG TSVFGGGAAN 540
  541 TPTFSFNKPA AAVNATTPSF NFNNPAASTA SPATSTTPGN SLFGGGLSKT ESTASSTTTP 600
  601 SFMFAKNSES AFPKPTFSFG KQQTPSTTAP AKQEENKQSE TPKSVFGSGF TSGGATFAAL 660
  661 SANSAKSGSI FDAANVKKAQ EELAAQKKAS IFGSKNTTLN TTSATSHDGD ETNEDGDGEY 720
  721 EPEVEFKPVI PLPDLVEVKT GEEDEEVMFS ARCKLYKYYS DLKENKERGL GDIKLLKSND 780
  781 NKYRIVMRRE QVHKLCANFR IEKSMKLSPK PNLPNVLTFM CQDFSEDASN ADPAIFTAKF 840
  841 KDEATAGAFK TAVQDAQSKM

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	None Entered	No Comments	Cheeseman, I.M., et al. (2004)
View Run	hcp-1	hcp1 IP from december2004	Cheeseman, I.M., et al. (2005)
View Run	hcp-2	hcp2 ip from december	Cheeseman, I.M., et al. (2005)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.97

Protein Overview: npp-9

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: