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Protein Overview: puf-7

General Information:
Name(s) found: puf-7 / CE16788 [WormBase]
Description(s) found:
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  • WBGene00004243 locus:puf-7 Pumilio domain-containing protein 7 status:Confirmed UniProt:O44169 protein_id:CCD61586.1 [WormBase]
  • pir||T32538 hypothetical protein B0273.2 - Caenorhabditis elegans [NCBI NR]
  • gi|2662593|gb|AAB88353.1| Puf (pumilio/fbf) domain-containing protein 7 [Caenorhabditis elegans] [NCBI NR]
  • gi|17541734|ref|NP_500820.1| PUF (Pumilio/FBF) domain-containing family member (puf-7) [Caenorhabditis elegans] [NCBI NR]
  • Pumilio domain-containing protein 7 OS=Caenorhabditis elegans GN=puf-7 PE=1 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE16788 WBGene00004243 locus:puf-7 status:Confirmed TR:O44169 protein_id:AAB88353.1 [wormpep150.fasta]
  • 16788 WBGene00004243 locus:puf-7 status:Confirmed TR:O44169 protein_id:AAB88353.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • PUmilio and FBF family member (54.8 kD) (puf-7) [Caenorhabditis elegans]gi|2662593|gb|AAB88353.1| Puf (pumilio/fbf) domain-containing protein 7 [Caenorhabditis elegans]gi|7494805|pir||T32538 hypothetical protein B0273.2 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:puf-7 status:Confirmed TR:O44169 protein_id:AAB88353.1 [wormpep115.fasta.reversed]
  • CE16788 locus:puf-7 status:Confirmed [wormpep80.hongbin]
  • CE16788 WBGene00004243 locus:puf-7 status:Confirmed UniProt:O44169_CAEEL protein_id:AAB88353.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE16788 WBGene00004243 locus:puf-7 status:Confirmed UniProt:O44169_CAEEL protein_id:AAB88353.1| [wormORF-contam.fasta]
  • Puf (pumilio/fbf) domain-containing protein 7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • PUF (Pumilio/FBF) domain-containing family member (puf-7) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE16788 WBGene00004243 locus:puf-7 status:Confirmed UniProt:O44169 protein_id:AAB88353.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE16788 WBGene00004243 locus:puf-7 status:Confirmed UniProt:O44169 protein_id:CCD61586.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE16788 WBGene00004243 locus:puf-7 status:Confirmed UniProt:O44169 protein_id:CCD61586.1 Pumilio domain-containing protein 7 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 485 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: germ cell development [IGILink to PubMed article]
    Molecular Function: RNA binding [IEALink to PubMed article][ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPNRRSTDS YNMLGASFDF DPDFSLLSNK THKNKNPKPP VKLLPYRHGS NTTSSDSDSY  60
   61 IFNSGSGSSD AETPAPVAPI FISLEDVLLN GQLIDFAIDP SGVKFLEANY PLDSEDQIRK 120
  121 AVFEKFTEST TLFVGLCHSR NGNFIVQKLV ELATPAEQRE LLRQMIDGGL LAMCKDKFAC 180
  181 RVVQLALQKF DHSNVFQLIQ ELSTFDLAAM CTDQISIHVI QRVVKQLPVD MWTFFVHFLS 240
  241 SGDSLMAVCQ DKYGCRLVQQ VIDRLAENPK LPCFKFRIQL LHSLMTCIVR NCYRLSSNEF 300
  301 ANYVIQYVIK SSGIMEMYRD TIIDKCLLRN LLSMSQDKYA SHVIEGAFLF APPALLHEMM 360
  361 EEIFSGYVKD VESNRDALDI LLFHQYGNYV VQQMISICTA ALIGKEEREL PPAILLLYSG 420
  421 WYEKMKQRVL QHASRLERFS SGKKIIDSVM RHGVPTAAAV NAQAAPSLME LTAQFDAMFP 480
  481 SFLAR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..485] PSI-BLAST 97.30103 Pumilio 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.72717267135753 bayes_pls_golite062009
  • protein binding
    		•  1.01840651819417 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle