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Protein Overview: btb-19

General Information:
Name(s) found: btb-19 / CE16153 [WormBase]
Description(s) found:
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  • WBGene00010194 locus:btb-19 status:Confirmed UniProt:O45594 protein_id:CAB05524.1 [WormBase]
  • pir||T22838 hypothetical protein F57C2.2 - Caenorhabditis elegans [NCBI NR]
  • gi|3877785|emb|CAB05524.1| C. elegans protein F57C2.2, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17534463|ref|NP_497015.1| BTB (Broad/complex/Tramtrack/Bric a brac) domain protein family member (btb-19) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE16153 WBGene00010194 BTB (also known as BR-C\/Ttk) domain. status:Partially_confirmed TR:O45594 protein_id:CAB05524.1 [wormpep150.fasta]
  • 16153 WBGene00010194 BTB (also known as BR-C\/Ttk) domain. status:Partially_confirmed TR:O45594 protein_id:CAB05524.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • BTB/POZ domain containing protein family member (2O804) [Caenorhabditis elegans]gi|3877785|emb|CAB05524.1| Hypothetical protein F57C2.2 [Caenorhabditis elegans]gi|7504514|pir||T22838 hypothetical protein F57C2.2 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • BTB (also known as BR-C\/Ttk) domain. status:Partially_confirmed TR:O45594 protein_id:CAB05524.1 [wormpep115.fasta.reversed]
  • CE16153 BTB (also known as BR-C\/Ttk) domain. status:Predicted TR:O45594 protein_id:CAB05524.1 [wormpep80.hongbin]
  • CE16153 WBGene00010194 locus:btb-19 BTB (also known as BR-C\/Ttk) domain. status:Partially_confirmed UniProt:O45594_CAEEL protein_id:CAB05524.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE16153 WBGene00010194 locus:btb-19 BTB (also known as BR-C\/Ttk) domain. status:Partially_confirmed UniProt:O45594_CAEEL protein_id:CAB05524.1| [wormORF-contam.fasta]
  • Hypothetical protein F57C2.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F57C2.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE16153 WBGene00010194 locus:btb-19 BTB (also known as BR-C\/Ttk) domain. status:Partially_confirmed UniProt:O45594 protein_id:CAB05524.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE16153 WBGene00010194 locus:btb-19 BTB (also known as BR-C\/Ttk) domain. status:Confirmed UniProt:O45594 protein_id:CAB05524.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE16153 WBGene00010194 locus:btb-19 status:Confirmed UniProt:O45594 protein_id:CAB05524.1 [wormpep246-ecoli-contam.fasta]
  • BTB (Broad/complex/Tramtrack/Bric a brac) domain protein OS=Caenorhabditis elegans GN=btb-19 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 299 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    Molecular Function: protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEVIEYKF ICPNITIYRE SLQHLYTSFA KGLKCVWKTR NTSGQTFFSW EFDLNELKNQ  60
   61 GIDGLMGRIS VNSDSIDLLN VQIDLKNSTE IIERVVHLYH NNYQYGYNYI PSATFEYSFV 120
  121 PYYAQAEGSL YDQMFLPSHE NDAILVIGKK KLHVCKAFLS YHSSFFRAIF SSTFKEGQMS 180
  181 EIPIKDVTYK DFALMLSTIY PDAVFPNDRT AEKLLEMGDR FIIQSVINHV EYHLLHNTKI 240
  241 GNEKLMWMAD RYGMSKLLVK SIRQMDSIEK AKALKSSPDY AKLSKEAKEK ILDRLMALI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered No Comments Cheeseman, I.M., et al. (2004)
    View Run gi|7499968 No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..122] PSI-BLAST 4.522879 Solution structure of N-terminal domain of speckle-type POZ protein
    2 View Details [123..238] PSI-BLAST 15.154902 No description for 2nn2A was found.
    3 View Details [239..299] PSI-BLAST 4.045757 No description for 2eqxA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.33435233481202 bayes_pls_golite062009
  • protein binding
    		•  0.90216988634563 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle