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Protein Overview: CE16031

General Information:
Name(s) found: CE16031 [WormBase]
Description(s) found:
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  • WBGene00009636 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase status:Confirmed UniProt:Q20340 protein_id:CAA92175.1 [WormBase]
  • pir||T22103 hypothetical protein F42F12.4 - Caenorhabditis elegans [NCBI NR]
  • gi|3877049|emb|CAA92175.1| C. elegans protein F42F12.4, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17567679|ref|NP_510072.1| hypothetical protein F42F12.4 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE16031 WBGene00009636 status:Confirmed TR:Q20340 protein_id:CAA92175.1 [wormpep150.fasta]
  • 16031 WBGene00009636 status:Confirmed TR:Q20340 protein_id:CAA92175.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • submergence induced protein 2A like (21.2 kD) (XM970) [Caenorhabditis elegans]gi|3877049|emb|CAA92175.1| Hypothetical protein F42F12.4 [Caenorhabditis elegans]gi|7503256|pir||T22103 hypothetical protein F42F12.4 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Confirmed TR:Q20340 protein_id:CAA92175.1 [wormpep115.fasta.reversed]
  • CE16031 status:Confirmed TR:Q20340 protein_id:CAA92175.1 [wormpep80.hongbin]
  • CE16031 WBGene00009636 status:Confirmed UniProt:Q20340_CAEEL protein_id:CAA92175.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE16031 WBGene00009636 status:Confirmed UniProt:Q20340_CAEEL protein_id:CAA92175.1| [wormORF-contam.fasta]
  • Hypothetical protein F42F12.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F42F12.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE16031 WBGene00009636 status:Confirmed UniProt:Q20340 protein_id:CAA92175.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE16031 WBGene00009636 status:Confirmed UniProt:Q20340 protein_id:CAA92175.1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [wormpep246-ecoli-contam.fasta]
  • 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Caenorhabditis elegans GN=CELE_F42F12.4 PE=1 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 178 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: L-methionine salvage from methylthioadenosine [IEALink to PubMed article]
    oxidation reduction [IEALink to PubMed article]
    Molecular Function: dioxygenase activity [IEALink to PubMed article]
    metal ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYFMTDVTK ENRQDECRFS PNKEATEEDL LRIGVECTKV NFDDEHVQED LDRLIKKYDM  60
   61 NFHDEVHICR ATMPNFDEKL DIFFEEHLHD DAELRVIKHG VGFFDVRTKD EAWIRIPVRR 120
  121 GDFVFLPAGI YHRFTTDPSE DVVALRLFRN NPKWTAFNRK ADGDEQRVRQ QYLNDISA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..178] PSI-BLAST 68.69897 Crystal structure of Acireductone dioxygenase (13543033) from Mus musculus at 2.06 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.10919583483877 bayes_pls_golite062009
  • catalytic activity
    		•  0.401988496917198 bayes_pls_golite062009
  • oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
    		•  0.262317442423345 bayes_pls_golite062009
  • protein binding
    		•  0.133891883527478 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle