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Protein Overview: CE13016

General Information:
Name(s) found: CE13016 [WormBase]
Description(s) found:
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  • WBGene00011353 status:Confirmed UniProt:Q93968 protein_id:CAB02298.1 [WormBase]
  • pir||T24337 threonine ammonia-lyase (EC 4.3.1.19) T01H8.2 [similarity] - Caenorhabditis elegans [NCBI NR]
  • gi|3879278|emb|CAB02298.1| C. elegans protein T01H8.2, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17508781|ref|NP_492318.1| hypothetical protein T01H8.2 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE13016 WBGene00011353 threonine dehydratase status:Partially_confirmed TR:Q93968 protein_id:CAB02298.1 [wormpep150.fasta]
  • 13016 WBGene00011353 threonine dehydratase status:Predicted TR:Q93968 protein_id:CAB02298.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • threonine dehydratase (1J146) [Caenorhabditis elegans]gi|3879278|emb|CAB02298.1| Hypothetical protein T01H8.2 [Caenorhabditis elegans]gi|7506917|pir||T24337 threonine ammonia-lyase (EC 4.3.1.19) T01H8.2 [similarity] - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • CE13016 WBGene00011353 threonine dehydratase status:Predicted TR:Q93968 protein_id:CAB02298.1 [wormpep132.fasta]
  • 13016 WBGene00011353 threonine dehydratase status:Partially_confirmed TR:Q93968 protein_id:CAB02298.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • threonine dehydratase status:Predicted TR:Q93968 protein_id:CAB02298.1 [wormpep115.fasta.reversed]
  • CE13016 threonine dehydratase status:Predicted TR:Q93968 protein_id:CAB02298.1 [wormpep80.hongbin]
  • CE13016 WBGene00011353 threonine dehydratase status:Partially_confirmed UniProt:Q93968_CAEEL protein_id:CAB02298.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE13016 WBGene00011353 threonine dehydratase status:Partially_confirmed UniProt:Q93968_CAEEL protein_id:CAB02298.1| [wormORF-contam.fasta]
  • Hypothetical protein T01H8.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • T01H8.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE13016 WBGene00011353 threonine dehydratase status:Confirmed UniProt:Q93968 protein_id:CAB02298.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE13016 WBGene00011353 status:Confirmed UniProt:Q93968 protein_id:CAB02298.1 [wormpep246-ecoli-contam.fasta]
  • Uncharacterized protein OS=Caenorhabditis elegans GN=CELE_T01H8.2 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 317 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: isoleucine biosynthetic process [IEALink to PubMed article]
    tryptophan biosynthetic process [IEALink to PubMed article]
    threonine biosynthetic process [IEALink to PubMed article]
    metabolic process [IEALink to PubMed article]
    cellular amino acid metabolic process [IEALink to PubMed article]
    cysteine biosynthetic process from serine [IEALink to PubMed article]
    Molecular Function: pyridoxal phosphate binding [IEALink to PubMed article]
    tryptophan synthase activity [IEALink to PubMed article]
    catalytic activity [IEALink to PubMed article]
    threonine synthase activity [IEALink to PubMed article]
    cysteine synthase activity [IEALink to PubMed article]
    L-threonine ammonia-lyase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTKITMEEM RAAYQRTAPF LHKTLVITSE NIDEKVGNGT HVLFKCEHLQ KTGSFKARGA  60
   61 LNSAILAKEK NAKGMIAHSS GNHGQALAWA AQKIGLPCTI VVPKNAPISK IEGMREYNAN 120
  121 IVFCEPTVTS RESVCADLTE KLEYYCVEPY NCVSMINGHS SVAFEILEQV GNEIDSIFLS 180
  181 VGGGGLASSV AFLIGNLRPD IEVYLVQPAQ KELSNFLENG IKCPVDTLDT IADGVRVARV 240
  241 GPLCEPILKQ YCAQKVISVK EDEIKEGLKL IWTRMKQRIE PTAALAFAGV LYHKPAHIKR 300
  301 PLVILCGGNV DTNYVIN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..317] PSI-BLAST 68.154902 Crystal Structure of S.pombe Serine Racemase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • threonine racemase activity
    		•  4.44340924206787 bayes_pls_golite062009
  • threonine synthase activity
    		•  3.59927532963055 bayes_pls_golite062009
  • cysteine synthase activity
    		•  3.57860549303214 bayes_pls_golite062009
  • L-threonine ammonia-lyase activity
    		•  3.33109959091277 bayes_pls_golite062009
  • catalytic activity
    		•  2.38994231321972 bayes_pls_golite062009
  • tryptophan synthase activity
    		•  1.99526226543975 bayes_pls_golite062009
  • lyase activity
    		•  1.87743897464083 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  0.923824749425553 bayes_pls_golite062009
  • binding
    		•  0.557628798477604 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.476674617721478 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  0.249761226675912 bayes_pls_golite062009
  • protein binding
    		•  0.066947056585999 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle