YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CE12778

General Information:
Name(s) found: CE12778 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00011253 Human NF45 protein like status:Confirmed UniProt:O62349 protein_id:CAB07644.1 [WormBase]
  • pir||T24195 hypothetical protein R11H6.5 - Caenorhabditis elegans [NCBI NR]
  • gi|3879144|emb|CAB07644.1| C. elegans protein R11H6.5, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17563154|ref|NP_506614.1| hypothetical protein R11H6.5 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE12778 WBGene00011253 Human NF45 protein like status:Partially_confirmed TR:O62349 protein_id:CAB07644.1 [wormpep150.fasta]
  • 12778 WBGene00011253 Human NF45 protein like status:Partially_confirmed TR:O62349 protein_id:CAB07644.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • interleukin enhancer binding factor 2 45kDa like (5P92) [Caenorhabditis elegans]gi|3879144|emb|CAB07644.1| Hypothetical protein R11H6.5 [Caenorhabditis elegans]gi|7506655|pir||T24195 hypothetical protein R11H6.5 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • Human NF45 protein like status:Partially_confirmed TR:O62349 protein_id:CAB07644.1 [wormpep115.fasta.reversed]
  • CE12778 Human NF45 protein like status:Partially_confirmed TR:O62349 protein_id:CAB07644.1 [wormpep80.hongbin]
  • CE12778 WBGene00011253 Human NF45 protein like status:Confirmed UniProt:O62349_CAEEL protein_id:CAB07644.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE12778 WBGene00011253 Human NF45 protein like status:Confirmed UniProt:O62349_CAEEL protein_id:CAB07644.1| [wormORF-contam.fasta]
  • R11H6.5 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein R11H6.5 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE12778 WBGene00011253 Human NF45 protein like status:Confirmed TR:O62349 protein_id:CAB07644.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE12778 WBGene00011253 Human NF45 protein like status:Confirmed UniProt:O62349 protein_id:CAB07644.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
    • Organism: Caenorhabditis elegans
    Length: 370 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: immune response [IEALink to PubMed article]
    Molecular Function: ATP binding [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]
    transferase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPGGNFPQF GVPIPQFRTI YDYTLDKGNL EGTKNTSDAV FEKEILDRAA NLTPSVEIRK  60
   61 RINEYAKKVI VALEKEKREK TLVDIGIATI SHVGSFVTDT TTHSSDKSDV VVQLSTLPSY 120
  121 ETVAELGRKV VENMKIADPK ETGEPLQMEY GCLITSHNCQ VRLLITIIPE ESTKLEPLLH 180
  181 LDSKQMMINF FSTRHITWFS QISSELPPAF IQEWQALVRV LKDTRSRYSD FQPLSIWTIQ 240
  241 YLAFYCLANG PNRQKACLGT AFRRFFEIIA AGIFLPKSPC LIDPVSANYR IGFDLTLPQM 300
  301 DTVCMGAQTL VRIFATGNDG YRAILGTHGT AADLTQTIST WKGIEIRPSI DAYRDGCMTR 360
  361 FPARAEIPTV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..370] PSI-BLAST 91.221849 Crystal structure of the 2'-specific and double-stranded RNA-activated interferon-induced antiviral protein 2'-5'-oligoadenylate synthetase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.222270543382941 bayes_pls_golite062009
  • transferase activity
    		•  0.00393984128503999 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle