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Protein Overview: giyd-1

General Information:
Name(s) found: giyd-1 / CE11216 [WormBase]
Description(s) found:
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  • WBGene00018909 locus:slx-1 Structure-specific endonuclease subunit SLX1 homolog status:Partially_confirmed UniProt:P91351 protein_id:CCD66429.1 [WormBase]
  • pir||T29147 hypothetical protein F56A3.2 - Caenorhabditis elegans [NCBI NR]
  • gi|17507665|ref|NP_491541.1| hypothetical protein F56A3.2 [Caenorhabditis elegans] [NCBI NR]
  • gi|1707043|gb|AAB37804.1| Hypothetical protein F56A3.2 [Caenorhabditis elegans] [NCBI NR]
  • Structure-specific endonuclease subunit SLX1 homolog OS=Caenorhabditis elegans GN=slx-1 PE=1 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE11216 WBGene00018909 status:Partially_confirmed TR:P91351 protein_id:AAB37804.1 [wormpep150.fasta]
  • 11216 WBGene00018909 status:Partially_confirmed TR:P91351 protein_id:AAB37804.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • excinuclease ABC, C subunit, N-terminal (50.5 kD) (1F753) [Caenorhabditis elegans]gi|1707043|gb|AAB37804.1| Hypothetical protein F56A3.2 [Caenorhabditis elegans]gi|7504363|pir||T29147 hypothetical protein F56A3.2 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:P91351 protein_id:AAB37804.1 [wormpep115.fasta.reversed]
  • CE11216 status:Partially_confirmed TR:P91351 protein_id:AAB37804.1 [wormpep80.hongbin]
  • CE11216 WBGene00018909 status:Partially_confirmed UniProt:P91351_CAEEL protein_id:AAB37804.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE11216 WBGene00018909 status:Partially_confirmed UniProt:P91351_CAEEL protein_id:AAB37804.1| [wormORF-contam.fasta]
  • F56A3.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein F56A3.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE11216 WBGene00018909 locus:giyd-1 status:Partially_confirmed UniProt:P91351 protein_id:AAB37804.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE11216 WBGene00018909 locus:slx-1 status:Partially_confirmed UniProt:P91351 protein_id:CCD66429.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE11216 WBGene00018909 locus:slx-1 status:Partially_confirmed UniProt:P91351 protein_id:CCD66429.1 Structure-specific endonuclease subunit SLX1 homolog [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 443 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEALink to PubMed article]
    Biological Process: DNA repair [IEALink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: zinc ion binding [IEALink to PubMed article]
    protein binding [IEALink to PubMed article]
    nuclease activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METFILSSDS DDDSGPPPSK RRTIEGIPRS FSGDKKIRFS FGASNMSQDT TQEIIPEDTD  60
   61 TVPLTIPSTP ALSGKFDSKT PKSVRRRSVS MSCFTPIVET INQPPTNQAC SSFLQKEYNF 120
  121 HDLSSDEEGG DGGAGCSKDE DKIIEDNLNL RALLSPEKKK RKEKIEEVQN EFYGVYCLIS 180
  181 RSDRPCYKNR CYIGYTVDPN RRIMQHNGGR DKGGAKKTDS RGPWDMVCVV HGFPNHVAAL 240
  241 HFEWAWQNPL VSKSLKEKQL RKERKETPFA FQLRIACELM NSSAFCRFAL TFRWLITTEE 300
  301 LPFPTSCVPP DHTKLRFGKV KKEMSLVPSK REDYLEMGEC RICGKDIEKL WSLVRCISAT 360
  361 CPSHFHSKCL SENGLKLKNE HVDHVYPLKA NCPTCGQFYL WGDIIREQRR IIKISTKCAE 420
  421 EFQNMVVRKE LPHREISPIS SKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] deduced N/A No confident structure predictions are available.
    2 View Details [118..168] MSA 1.055996 View MSA. No confident structure predictions are available.
    3 View Details [169..265] PSI-BLAST 21.69897 Solution NMR structure of the UPF0213 protein BH0048 from Bacillus halodurans. Northeast Structural Genomics target BhR2.
    4 View Details [266..443] FFAS03 2.32 No description for 2cklB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle