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Protein Overview: lsm-5

General Information:
Name(s) found: lsm-5 / CE09757 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00003079 locus:lsm-5 status:Confirmed UniProt:O18694 protein_id:CAB03013.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 91 amino acids

    Gene Ontology:
    Cellular Component: ribonucleoprotein complex [IEALink to PubMed article]
    Biological Process: mRNA metabolic process [IEALink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSTSTNPN TLLPLELIDK CIGSKIWVIM KNDKEIVGTL TGFDDYVNMV LEDVVEYENT  60
   61 ADGKRMTKLD TILLNGNHIT MLVPGGEGPE I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] PSI-BLAST 13.221849 Crystal structure of Cryptosporidium parvum U6 snRNA-associated Sm-like protein LSm5

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.04681172391952 bayes_pls_golite062009
  • protein binding
    		•  0.441246606284457 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle