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Protein Overview: rpa-0

General Information:
Name(s) found: rpa-0 / CE09655 [WormBase]
Description(s) found:
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  • WBGene00004408 locus:rla-0 60S acidic ribosomal protein P0 status:Confirmed UniProt:Q93572 protein_id:CAB02098.1 [WormBase]
  • pir||T21351 hypothetical protein F25H2.10 - Caenorhabditis elegans [NCBI NR]
  • gi|3876334|emb|CAB02098.1| C. elegans protein F25H2.10, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|2500216|sp|Q93572.3|RLA0_CAEEL RecName: Full=60S acidic ribosomal protein P0 [NCBI NR]
  • gi|17506815|ref|NP_492766.1| Replication Protein A homolog family member (rpa-0) [Caenorhabditis elegans] [NCBI NR]
  • 60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE09655 WBGene00004408 locus:rpa-0 deoxyribonuclease status:Confirmed SW:Q93572 protein_id:CAB02098.1 [wormpep150.fasta]
  • 09655 WBGene00004408 locus:rpa-0 deoxyribonuclease status:Confirmed SW:Q93572 protein_id:CAB02098.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • ribosomal Protein, Acidic (33.8 kD) (rpa-0) [Caenorhabditis elegans]gi|3876334|emb|CAB02098.1| Hypothetical protein F25H2.10 [Caenorhabditis elegans]gi|7499824|pir||T21351 hypothetical protein F25H2.10 - Caenorhabditis elegansgi|2500216|sp|Q93572|RLA0_ [nrdb_11152004_Chlamydomonas]
  • locus:rpa-0 deoxyribonuclease status:Confirmed SW:Q93572 protein_id:CAB02098.1 [wormpep115.fasta.reversed]
  • CE09655 locus:rpa-0 deoxyribonuclease status:Confirmed SW:Q93572 protein_id:CAB02098.1 [wormpep80.hongbin]
  • CE09655 WBGene00004408 locus:rpa-0 deoxyribonuclease status:Confirmed UniProt:RLA0_CAEEL protein_id:CAB02098.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE09655 WBGene00004408 locus:rpa-0 deoxyribonuclease status:Confirmed UniProt:RLA0_CAEEL protein_id:CAB02098.1| [wormORF-contam.fasta]
  • F25H2.10 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • 60S acidic ribosomal protein P0 [nr-271106-contam.fasta]
  • Hypothetical protein F25H2.10 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE09655 WBGene00004408 locus:rpa-0 deoxyribonuclease status:Confirmed UniProt:Q93572 protein_id:CAB02098.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE09655 WBGene00004408 locus:rla-0 deoxyribonuclease status:Confirmed UniProt:Q93572 protein_id:CAB02098.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE09655 WBGene00004408 locus:rla-0 status:Confirmed UniProt:Q93572 protein_id:CAB02098.1 60S acidic ribosomal protein P0 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 312 amino acids

    Gene Ontology:
    Cellular Component: ribosome [IEALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: nematode larval development [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    ribosome biogenesis [IEALink to PubMed article]
    translational elongation [IEALink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: structural constituent of ribosome [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVREDRSTWK ANYFTKLVEL FEEYPKCLLV GVDNVGSKQM QEIRQAMRGH AEILMGKNTM  60
   61 IRKALRGHLG KNPSLEKLLP HIVENVGFVF TKEDLGEIRS KLLENRKGAP AKAGAIAPCD 120
  121 VKLPPQNTGM GPEKTSFFQA LQIPTKIARG TIEILNDVHL IKEGDKVGAS ESALLNMLGV 180
  181 TPFSYGLVVR QVYDDGTLYT PEVLDMTTEE LRKRFLSGVR NVASVSLAVN YPTLASVAHS 240
  241 LANGLQNMLG VAAVTDVSFK EAETIKAFIA DPSKFAAAAP AAAAAPAAAA PAAKKEEPKE 300
  301 ESDDDMGFGL FD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered No Comments Cheeseman, I.M., et al. (2004)
    View Run knl-1 No Comments Cheeseman, I.M., et al. (2004)
    View Run None Entered No Comments Cheeseman, I.M., et al. (2004)
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..312] PSI-BLAST 58.0 Ribosomal protein L10


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle