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Protein Overview: sym-1

General Information:
Name(s) found: sym-1 / CE08724 [WormBase]
Description(s) found:
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  • WBGene00006366 locus:sym-1 status:Confirmed UniProt:G5EFP4 protein_id:CAB01865.1 [WormBase]
  • pir||T19939 hypothetical protein C44H4.3 - Caenorhabditis elegans [NCBI NR]
  • gi|4886309|emb|CAB43345.1| SYM-1 protein [Caenorhabditis elegans] [NCBI NR]
  • gi|3874943|emb|CAB01865.1| C. elegans protein C44H4.3, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17551022|ref|NP_510426.1| SYnthetic lethal with Mec family member (sym-1) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE08724 WBGene00006366 locus:sym-1 Drosophila chaoptin protein like status:Confirmed TR:Q93374 protein_id:CAB01865.1 [wormpep150.fasta]
  • 08724 WBGene00006366 locus:sym-1 Drosophila chaoptin protein like status:Confirmed TR:Q93374 protein_id:CAB01865.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • G protein-coupled receptor 48 family member, SYnthetic lethal with Mec SYM-1 (75.6 kD) (sym-1) [Caenorhabditis elegans]gi|3874943|emb|CAB01865.1| Hypothetical protein C44H4.3 [Caenorhabditis elegans]gi|7497432|pir||T19939 hypothetical protein C44H4.3 - [nrdb_11152004_Chlamydomonas]
  • locus:sym-1 Drosophila chaoptin protein like status:Confirmed TR:Q93374 protein_id:CAB01865.1 [wormpep115.fasta.reversed]
  • CE08724 locus:sym-1 Drosophila chaoptin protein like status:Confirmed TR:Q93374 protein_id:CAB01865.1 [wormpep80.hongbin]
  • CE08724 WBGene00006366 locus:sym-1 Drosophila chaoptin protein like status:Confirmed UniProt:Q93374_CAEEL protein_id:CAB01865.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE08724 WBGene00006366 locus:sym-1 Drosophila chaoptin protein like status:Confirmed UniProt:Q93374_CAEEL protein_id:CAB01865.1| [wormORF-contam.fasta]
  • SYM-1 protein [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein C44H4.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • SYnthetic lethal with Mec family member (sym-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE08724 WBGene00006366 locus:sym-1 Drosophila chaoptin protein like status:Confirmed UniProt:Q93374 protein_id:CAB01865.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE08724 WBGene00006366 locus:sym-1 Drosophila chaoptin protein like status:Confirmed UniProt:G5EFP4 protein_id:CAB01865.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE08724 WBGene00006366 locus:sym-1 status:Confirmed UniProt:G5EFP4 protein_id:CAB01865.1 [wormpep246-ecoli-contam.fasta]
  • SYM-1 protein OS=Caenorhabditis elegans GN=sym-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 680 amino acids

    Gene Ontology:
    Cellular Component: extracellular space [IDA]
    Biological Process: NONE FOUND
    Molecular Function: protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLRLCVALL VLPACLAFCP KLFQNQTACS CDSTVEGPVI KCSGHDGLRM VEKLSTTTTM  60
   61 EVRELALENA DIIEVGPKAF KTLRIKKLIL SNNRIEKIHD HAFTGLENVM QELSLSENNL 120
  121 KEVPTSALAG LRVLNILSLK CNKIENITTK AFVNMTSLID VNLGCNQICS MAADTFANVK 180
  181 MSLQNLILDN NCMTEFPSKA VRNMNNLIAL HIKYNKINAI RQNDFVNLTS LSMLSLNGNN 240
  241 ISEIKGGALQ NTPNLHYLYL NENNLQTLDN GVLEQFKQLQ VLDLSFNNFT DITKEMFEGL 300
  301 ESIQHLNLDS NRISAVAPGA FAGTPLLLLW LPNNCLTEVS QQTLKGAPFL RMVSLSNNNI 360
  361 REVHELSFDH LPNLHTLDLA NNKIMSLQNK SLSGPENLAV RLQENPVVCV KNGFHVLNSG 420
  421 EAIWLTNEAN TICKGEWQAQ TADLCPKAQP RPIRPVCCSN EITTTTTTTT TTTTLAPTTT 480
  481 TEEEKEETTE TTEKVTTVGK SKKTKATTTT EEPEDDEDVY VDDDEEGTEE EEEEVSTTEK 540
  541 STTTTTTTTE ASKSKKVNME RFWRLSNKPS GKSPFLRHSQ GNKPRYLQTT TEAPEEEDEA 600
  601 EYISDDGGAE ESEEAETTVA TTTTTEPSVK VPARIRERQR MFASNIPWMA PRTKTDSVEE 660
  661 EFSKDDEVET VETAEKPARH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..560] PSI-BLAST 25.69897 No description for 2z64A was found.
    2 View Details [561..680] MSA 1.069993 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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