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Protein Overview: sod-3

General Information:
Name(s) found: sod-3 / CE08002 [WormBase]
Description(s) found:
Found 26 descriptions.
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  • WBGene00004932 locus:sod-3 Superoxide dismutase [Mn] 2, mitochondrial status:Confirmed UniProt:P41977 protein_id:CCD63614.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 218 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDA]
    Biological Process: superoxide metabolic process [IEALink to PubMed article]
    determination of adult lifespan [IMPLink to PubMed article]
    Molecular Function: metal ion binding [IEALink to PubMed article]
    superoxide dismutase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQSTARTAS KLVQPVAGVL AVRSKHTLPD LPFDYADLEP VISHEIMQLH HQKHHATYVN  60
   61 NLNQIEEKLH EAVSKGNLKE AIALQPALKF NGGGHINHSI FWTNLAKDGG EPSKELMDTI 120
  121 KRDFGSLDNL QKRLSDITIA VQGSGWGWLG YCKKDKILKI ATCANQDPLE GMVPLFGIDV 180
  181 WEHAYYLQYK NVRPDYVHAI WKIANWKNIS ERFANARQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..218] PSI-BLAST 82.221849 Mn superoxide dismutase (MnSOD)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • superoxide dismutase activity
    		•  7.08472506566271 bayes_pls_golite062009
  • oxidoreductase activity, acting on superoxide radicals as acceptor
    		•  7.08472506566271 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.73079314406851 bayes_pls_golite062009
  • protein binding
    		•  1.36581969443298 bayes_pls_golite062009
  • binding
    		•  1.30562201415299 bayes_pls_golite062009
  • antioxidant activity
    		•  0.766723962166325 bayes_pls_golite062009
  • cation binding
    		•  0.485672227923388 bayes_pls_golite062009
  • metal ion binding
    		•  0.485672227923388 bayes_pls_golite062009
  • ion binding
    		•  0.480092270451566 bayes_pls_golite062009
  • catalytic activity
    		•  0.390489225704392 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.66

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle