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Protein Overview: lys-8

General Information:
Name(s) found: lys-8 / CE06846 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00003097 locus:lys-8 status:Confirmed UniProt:Q09975 protein_id:CCD64956.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 286 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cell wall macromolecule catabolic process [IEALink to PubMed article]
    peptidoglycan catabolic process [IEALink to PubMed article]
    Molecular Function: lysozyme activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLKSVALLS VLAVLCHSAS VSVKVLPFVD SSLPVKFREV IAEAAPRVPP NLASYAFAVD  60
   61 LSVPVSLSQL QCLKQAGYSA VFVRAYNPAG QGSFDTNSCN TIQNAYNAGL GTEIYMTPQP 120
  121 ASSKQGYQQL DEIYQGLTAR GITIRSVWIQ VTSPTNWPSN ANNNVNFINS IVSRARQYGM 180
  181 TVGIYTSYYD WNQITNGWSS IGNDVLLWYW NVLGGGVNGE TPASFADFRA FGCWTTPSVK 240
  241 QFAQVEQVCQ FTVNRDVYAA GTMLKAADAV EEDGKIYAGG FIQGSQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..286] PSI-BLAST 44.30103 Streptomyces lysozyme

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity, acting on glycosyl bonds
    		•  0.279839460874635 bayes_pls_golite062009
  • hydrolase activity
    		•  0.220893158135492 bayes_pls_golite062009
  • catalytic activity
    		•  0.191302991685802 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  0.0804992363272641 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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