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Protein Overview: lys-4

General Information:
Name(s) found: lys-4 / CE06003 [WormBase]
Description(s) found:
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  • WBGene00003093 locus:lys-4 status:Confirmed UniProt:Q20964 protein_id:CAA97797.1 [WormBase]
  • pir||T22892 hypothetical protein F58B3.1 - Caenorhabditis elegans [NCBI NR]
  • gi|3877878|emb|CAA97797.1| C. elegans protein F58B3.1, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17540786|ref|NP_502192.1| LYSozyme family member (lys-4) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE06003 WBGene00003093 locus:lys-4 status:Confirmed TR:Q20964 protein_id:CAA97797.1 [wormpep150.fasta]
  • 06003 WBGene00003093 locus:lys-4 status:Confirmed TR:Q20964 protein_id:CAA97797.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • lysozyme (23.6 kD) (lys-4) [Caenorhabditis elegans]gi|3877878|emb|CAA97797.1| Hypothetical protein F58B3.1 [Caenorhabditis elegans]gi|7504589|pir||T22892 hypothetical protein F58B3.1 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:lys-4 status:Confirmed TR:Q20964 protein_id:CAA97797.1 [wormpep115.fasta.reversed]
  • CE06003 locus:lys-4 status:Confirmed TR:Q20964 protein_id:CAA97797.1 [wormpep80.hongbin]
  • CE06003 WBGene00003093 locus:lys-4 status:Confirmed UniProt:Q20964_CAEEL protein_id:CAA97797.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE06003 WBGene00003093 locus:lys-4 status:Confirmed UniProt:Q20964_CAEEL protein_id:CAA97797.1| [wormORF-contam.fasta]
  • LYSozyme family member (lys-4) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein F58B3.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE06003 WBGene00003093 locus:lys-4 status:Confirmed UniProt:Q20964 protein_id:CAA97797.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • LYSozyme OS=Caenorhabditis elegans GN=lys-4 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 214 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cell wall macromolecule catabolic process [IEALink to PubMed article]
    peptidoglycan catabolic process [IEALink to PubMed article]
    Molecular Function: lysozyme activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFFVSALLL IGAASAARNG IDFIQPVSTA TFQCIHKAGY SFVIPRVFTS VGTLDHTGIQ  60
   61 NVKNARAAGL TDVDGYIFPC LRSNCPSAAN QVKETLDALK SAGTHVSTLW LDIERLAWPA 120
  121 NHASNRAFIE AMVREAQAYK QQVGIYSNYY NWQDIVGLDY HGQSSLMLWW ATYDGIKDFS 180
  181 KFAPFGGWSR PTIHQWEGTT TGPCGVSVDM NYVP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..214] PSI-BLAST 43.69897 Streptomyces lysozyme

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.32563207632796 bayes_pls_golite062009
  • hydrolase activity
    		•  0.85514037342026 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  0.80912338090552 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  0.41375210927547 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle