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Protein Overview: lsm-1

General Information:
Name(s) found: lsm-1 / CE05848 [WormBase]
Description(s) found:
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  • WBGene00003076 locus:lsm-1 status:Confirmed UniProt:Q20229 protein_id:CAA93263.1 [WormBase]
  • pir||T22035 hypothetical protein F40F8.9 - Caenorhabditis elegans [NCBI NR]
  • gi|3876945|emb|CAA93263.1| C. elegans protein F40F8.9, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17533843|ref|NP_496385.1| LSM Sm-like protein family member (lsm-1) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE05848 WBGene00003076 locus:lsm-1 Yeast J0714 like status:Confirmed TR:Q20229 protein_id:CAA93263.1 [wormpep150.fasta]
  • 05848 WBGene00003076 locus:lsm-1 Yeast J0714 like status:Confirmed TR:Q20229 protein_id:CAA93263.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • u6 snRNA-associated Sm-like protein (lsm-1) [Caenorhabditis elegans]gi|3876945|emb|CAA93263.1| Hypothetical protein F40F8.9 [Caenorhabditis elegans]gi|7503076|pir||T22035 hypothetical protein F40F8.9 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:lsm-1 Yeast J0714 like status:Partially_confirmed TR:Q20229 protein_id:CAA93263.1 [wormpep115.fasta.reversed]
  • CE05848 Yeast J0714 like status:Predicted TR:Q20229 protein_id:CAA93263.1 [wormpep80.hongbin]
  • CE05848 WBGene00003076 locus:lsm-1 Yeast J0714 like status:Confirmed UniProt:Q20229_CAEEL protein_id:CAA93263.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE05848 WBGene00003076 locus:lsm-1 Yeast J0714 like status:Confirmed UniProt:Q20229_CAEEL protein_id:CAA93263.1| [wormORF-contam.fasta]
  • LSM Sm-like protein family member (lsm-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein F40F8.9 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE05848 WBGene00003076 locus:lsm-1 Yeast J0714 like status:Confirmed UniProt:Q20229 protein_id:CAA93263.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE05848 WBGene00003076 locus:lsm-1 status:Confirmed UniProt:Q20229 protein_id:CAA93263.1 [wormpep246-ecoli-contam.fasta]
  • LSM Sm-like protein OS=Caenorhabditis elegans GN=lsm-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 125 amino acids

    Gene Ontology:
    Cellular Component: ribonucleoprotein complex [IEALink to PubMed article]
    Biological Process: mRNA metabolic process [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPDPYLPG AISLFEQLDK KLLVVLRDGR KLIGFLRSID QFANLILEDV VERTFVEKYF  60
   61 CETGQGFMLI RGENVELAGE IDDTIETGLT QVSPEEFRRL EDEYIAKNPP KFLKRQAEKT 120
  121 EEHDA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..125] PSI-BLAST 14.522879 D1 core SNRNP protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.863258635994511 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle