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Protein Overview: lgc-20

General Information:
Name(s) found: lgc-20 / CE02106 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00007191 locus:lgc-20 status:Partially_confirmed UniProt:Q17511 protein_id:CAA90086.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 454 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: ion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLVLFGAL LLIQTSEQMV QCRYTKNLTN RADGGDEHCL FYYLLNKEYE KSGSVHSLSA  60
   61 YPPNSDEMTI TIENVLVKYV ELVKGSSYQF NVFGDIYLNW KDERMKWDKK GEFENYEHLY 120
  121 IFNSSAIWTP HVIDHTLCSE GGCSYSVDDV DIYDDGTIYA RIQFKYLASC TVDYRKFPEE 180
  181 DDSCCIFFTA FEPNVEQTTL VLEGKEKEKM NRPVYAQKIY EKEKQLSDIV QEHSPWVVVE 240
  241 KTMSTSNLGG LKSLQVMQVC VRAEKQMSTV RVALLFPVTL ATYVMLASPL FGDLRTQIYV 300
  301 KLFSLHIQTL CFLYLCTITP LNGFLGVRPR IYIFYELIFT ISFMSILVTL VVMALSRVKR 360
  361 NVPPSHRLFL SAKLINRVVC CIEPERSDAY HRYVEEDTPE SRTTSEVSQQ QSVIRPGAEL 420
  421 DYTQDWRHIY LAMNNMFSAL MFSVFLFMTF LEFF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..454] PSI-BLAST 69.0 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle