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Protein Overview: CE01922

General Information:
Name(s) found: CE01922 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00017776 CDK5RAP1-like protein status:Partially_confirmed UniProt:Q09316 protein_id:CCD68781.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 547 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [IEALink to PubMed article]
    Biological Process: RNA modification [IEALink to PubMed article]
    embryonic development ending in birth or egg hatching [IMP]
    Molecular Function: catalytic activity [IEALink to PubMed article]
    iron-sulfur cluster binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRQWWLRSV GSCSTVYRAH SGCSTSAAVK PKRAIPTDGL QLSDFIKEST KKQRQKAIIP  60
   61 SIEDTKEYLN PEDLQGNGRT VCYVTYGCQM NVSDMEIVRS IMTKYGFVES DKKENADIVL 120
  121 LMTCSIRDGA EKKVWNQLKL IRSNSVNKGQ IVGVLGCMAE RVRHDLLEKR NLVNIVAGPD 180
  181 SYRDLPRLVA VAAGGSNGIN VQLSLDETYA DVQPIRVDSA SKTAFISIMR GCDNMCTYCV 240
  241 VPFTRGRERS RPIESIVEEV QRLRDQGYKQ VTLLGQNVNS YRDMTSMDFS MAPSTSQEDR 300
  301 VPGFKTVYKP KSGGLTFTTL LEKVADAAPD IRFRFTSPHP KDFPMQLIEL IASRPNLCKQ 360
  361 LHLPAQSGDD ETLERMERGY TRDLYLRLVD DIRHVLPSVS LTSDFIAGFC GETEQAHQNT 420
  421 LSLIRAVRYS FCFVFPYSMR GKTRAHHRLT DDVPEDVKAR RHLDLTTVFR EEALKLNQAL 480
  481 IGSEQTVLLE GKSKRDASFS HGRIDGGVKA VFDNSKLCLE PGQYAKILIT DANSQTLKAQ 540
  541 LIGQSSI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] deduced N/A No confident structure predictions are available.
    2 View Details [79..219] FFAS03 0.972 Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
    3 View Details [220..547] PSI-BLAST 66.30103 No description for 2qgqA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.31391544670091 bayes_pls_golite062009
  • NADH dehydrogenase activity
    		•  1.12687320369727 bayes_pls_golite062009
  • NADH dehydrogenase (quinone) activity
    		•  0.961709183630333 bayes_pls_golite062009
  • binding
    		•  0.880117216098541 bayes_pls_golite062009
  • NADH dehydrogenase (ubiquinone) activity
    		•  0.848226595871555 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  0.793846453693773 bayes_pls_golite062009
  • protein binding
    		•  0.0998292353431207 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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