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Protein Overview: CE01611

General Information:
Name(s) found: CE01611 [WormBase]
Description(s) found:
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  • WBGene00010990 Transcription elongation factor B polypeptide 3 status:Confirmed UniProt:Q09413 protein_id:CAA86857.1 [WormBase]
  • gi|3878793|emb|CAA86857.1| C. elegans protein R03D7.4, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • pir||D88305 protein R03D7.4 [imported] - Caenorhabditis elegans [NCBI NR]
  • gi|17535409|ref|NP_496355.1| hypothetical protein R03D7.4 [Caenorhabditis elegans] [NCBI NR]
  • gi|1731139|sp|Q09413.1|ELOA1_CAEEL RecName: Full=Transcription elongation factor B polypeptide 3; AltName: Full=RNA polymerase II transcription factor SIII subunit A; AltName: Full=Elongin-A [NCBI NR]
  • Transcription elongation factor B polypeptide 3 OS=Caenorhabditis elegans GN=R03D7.4 PE=3 SV=1 [Swiss-Prot]
  • (Q09413) Transcription elongation factor B polypeptide 3 (RNA polymerase II transcription factor SIII subunit A) (Elongin A) [Swiss-Prot]
  • [wormpep67.fasta]
  • CE01611 WBGene00010990 status:Confirmed SW:Q09413 protein_id:CAA86857.1 [wormpep150.fasta]
  • 01611 WBGene00010990 status:Confirmed SW:Q09413 protein_id:CAA86857.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • transcription elongation factor B polypeptide 3 like (49.2 kD) (2L234) [Caenorhabditis elegans]gi|3878793|emb|CAA86857.1| Hypothetical protein R03D7.4 [Caenorhabditis elegans]gi|25354043|pir||D88305 protein R03D7.4 [imported] - Caenorhabditis elegansgi [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed SW:Q09413 protein_id:CAA86857.1 [wormpep115.fasta.reversed]
  • CE01611 status:Partially_confirmed SW:Q09413 protein_id:CAA86857.1 [wormpep80.hongbin]
  • CE01611 WBGene00010990 status:Confirmed UniProt:Q09413 protein_id:CAA86857.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE01611 WBGene00010990 status:Confirmed UniProt:Q09413 protein_id:CAA86857.1| [wormORF-contam.fasta]
  • Transcription elongation factor B polypeptide 3 (RNA polymerase II transcription factor SIII subunit A) (Elongin-A) [nr-271106-contam.fasta]
  • R03D7.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein R03D7.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE01611 WBGene00010990 status:Confirmed UniProt:Q09413 protein_id:CAA86857.1 Transcription elongation factor B polypeptide 3 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 434 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: regulation of transcription [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPETDEEKVR RYTECLMNGI DPKRALKRLY DLNVSPEVFK SADTYQCVKR YESSPELAKY  60
   61 AKRVRDKLLG GRKREKGGGE DDADIEHTAL KKAKKEEVNL DEEFAEAMKS GVSAQASSAP 120
  121 RATVDYSKYK VVKRVEVKVE PKPEPVDVHE QQASSSSMSY QREHQKDYAP VVPTCKPSGQ 180
  181 PKKAIPQSKS LHADENMFKP RKERQKVFAG RRKRVGEGVS TLVSLCQTVL MSHIDMIDHV 240
  241 GIVPFDLLKP VLDHASTDQL RHILDVNPML VEDADEMFHE MVSREFPKYA NREKSGWTWR 300
  301 EMYDRLVEKK QKKENDKLEM LTSRIGKSNS AQSQGRQTMV IDMAHTRVRS KSFFNTVKDS 360
  361 QVKMSATPSA LQLSQARKNV KIEGKAQLRT ITPRGGGVPS TSRSRSNNNN NMNNGLVVKK 420
  421 TAPLMAKCKK MLKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] MSA 4.014975 View MSA. No confident structure predictions are available.
    2 View Details [137..211] deduced N/A No confident structure predictions are available.
    3 View Details [212..354] Pfam 84.823909 No description for PF06881.2 was found. No confident structure predictions are available.
    4 View Details [355..434] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle