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Protein Overview: nit-1

General Information:
Name(s) found: nit-1 / CE01106 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00014206 locus:nit-1 status:Confirmed UniProt:Q23384 protein_id:CAA84681.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 305 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: nitrogen compound metabolic process [IEALink to PubMed article]
    Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKIAIVQAG TPLFDKPATL EKVKKNVEEA AGNGAELVLF PEAFIGGYPK WNSFGITMGT  60
   61 RTPEGRKEFK RYFENAIEEN GEESKLIESL AAQNNIHIVI GVVEREASTL YCSVFFYSPS 120
  121 GYLGKHRKLL PTALERCVWG QGDGSTMPVF STSVGKIGSA ICWENYMPLY RMTLYSKEIQ 180
  181 IYLAPTVDDR DVWLSTMRTI ALEGRCFVVS ACQFLKSSDY PLDHPLRKEH GEDKVLIRGG 240
  241 SCAVDPLGTV LVEPDFTKET IRYTEFDLSD LALGKMDLDV VGHYSRPDVF QLKVNENSQS 300
  301 TVVKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..305] PSI-BLAST 60.522879 Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  2.08563993959019 bayes_pls_golite062009
  • catalytic activity
    		•  1.64442398754697 bayes_pls_golite062009
  • binding
    		•  1.58491015879508 bayes_pls_golite062009
  • protein binding
    		•  0.276768866737717 bayes_pls_golite062009
  • hydrolase activity
    		•  0.056614713418243 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle