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Protein Overview: gbh-1

General Information:
Name(s) found: gbh-1 / CE00940 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00001522 locus:gbh-1 Probable gamma-butyrobetaine dioxygenase status:Confirmed UniProt:Q19000 protein_id:CAA85412.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 421 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: electron transport [IEALink to PubMed article]
    carnitine biosynthetic process [IEALink to PubMed article]
    Molecular Function: L-ascorbic acid binding [IEALink to PubMed article]
    trimethyllysine dioxygenase activity [IEALink to PubMed article]
    oxidoreductase activity [IEALink to PubMed article]
    iron ion binding [IEALink to PubMed article]
    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSALLIRNI RNASKLASVA GPNSDRIVNV KWSDGKTGVF PLIWLRDTSP DPSTYTISPA  60
   61 MTARKLTMLE FDVEQNARKL WIDEDANCLK IEWESGVLSE FPSEWLKIRN PSDQEARRRR 120
  121 RKVYLFPEQT WGKAEIEGKL KKFSHEEFMK NEQVVHDFLQ AVCIDGIAVL KGAPQGVRGA 180
  181 VEAIGDRIGM IKRTHFGLVF EVSLKADASN MAYASNGGLP FHTDFPSLSH PPQLQMLHML 240
  241 QSAEEGGHSL FVDGFHVAEQ LRVEKPEIFK ILTTQSMEYI EEGYDVHEIN GKTIRFDYDM 300
  301 CARHKVIRLN DDGKVNKIQF GNAMRSWFYD CEPSKVQDVY RAMKTFTEYC YQPRNMLKFR 360
  361 LEDGDTVLWA NQRLLHTRDG FRNAPEKART LTGCYFDWDI VKSRVRFLRD KLSLEQNQPS 420
  421 A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..123] MSA 53.196997 View MSA. No confident structure predictions are available.
    2 View Details [124..421] PSI-BLAST 54.69897 Taurine/alpha-ketoglutarate dioxygenase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • damaged DNA binding
    		•  2.1600632791412 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.14660717798066 bayes_pls_golite062009
  • oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
    		•  1.96457406152694 bayes_pls_golite062009
  • binding
    		•  0.997838210709106 bayes_pls_golite062009
  • catalytic activity
    		•  0.921320409505 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.195303464765705 bayes_pls_golite062009
  • DNA binding
    		•  0.119653205743915 bayes_pls_golite062009
  • protein binding
    		•  0.0481711987500598 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle