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Protein Overview: chc-1

General Information:
Name(s) found: chc-1 / CE00480 [WormBase]
Description(s) found:
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  • WBGene00011867 locus:chc-1 Probable clathrin heavy chain 1 status:Partially_confirmed UniProt:P34574 protein_id:CAA83003.1 [WormBase]
  • pir||S42369 Clathrin heavy chain homolog - Caenorhabditis elegans [NCBI NR]
  • gi|461752|sp|P34574.1|CLH_CAEEL RecName: Full=Probable clathrin heavy chain 1 [NCBI NR]
  • gi|458481|emb|CAA83003.1| C. elegans protein T20G5.1, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17555172|ref|NP_499260.1| Clathrin Heavy Chain family member (chc-1) [Caenorhabditis elegans] [NCBI NR]
  • Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1 PE=3 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE00480 WBGene00011867 locus:chc-1 Clathrin heavy chain status:Partially_confirmed SW:P34574 protein_id:CAA83003.1 [wormpep150.fasta]
  • 00480 WBGene00011867 Clathrin heavy chain status:Partially_confirmed SW:P34574 protein_id:CAA83003.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • clathrin heavy (3L297) [Caenorhabditis elegans]gi|458481|emb|CAA83003.1| Hypothetical protein T20G5.1 [Caenorhabditis elegans]gi|630584|pir||S42369 Clathrin heavy chain homolog - Caenorhabditis elegansgi|461752|sp|P34574|CLH_CAEEL Probable clathrin hea [nrdb_11152004_Chlamydomonas]
  • CE00480 WBGene00011867 Clathrin heavy chain status:Partially_confirmed SW:P34574 protein_id:CAA83003.1 [wormpep132.fasta]
  • 00480 WBGene00011867 locus:chc-1 Clathrin heavy chain status:Partially_confirmed SW:P34574 protein_id:CAA83003.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • Clathrin heavy chain status:Partially_confirmed SW:P34574 protein_id:CAA83003.1 [wormpep115.fasta.reversed]
  • CE00480 Clathrin heavy chain status:Partially_confirmed SW:P34574 protein_id:CAA83003.1 [wormpep80.hongbin]
  • CE00480 WBGene00011867 locus:chc-1 Clathrin heavy chain status:Partially_confirmed UniProt:P34574 protein_id:CAA83003.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE00480 WBGene00011867 locus:chc-1 Clathrin heavy chain status:Partially_confirmed UniProt:P34574 protein_id:CAA83003.1| [wormORF-contam.fasta]
  • Clathrin Heavy Chain family member (chc-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Probable clathrin heavy chain protein 1 [nr-271106-contam.fasta]
  • Hypothetical protein T20G5.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE00480 WBGene00011867 locus:chc-1 status:Partially_confirmed UniProt:P34574 protein_id:CAA83003.1 Probable clathrin heavy chain 1 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 1681 amino acids

    Gene Ontology:
    Cellular Component: clathrin coat of trans-Golgi network vesicle [IEALink to PubMed article]
    clathrin coat of coated pit [IEALink to PubMed article]
    Biological Process: vesicle-mediated transport [IEALink to PubMed article]
    protein complex assembly [IEALink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    determination of adult lifespan [IMPLink to PubMed article]
    intracellular protein transport [IEALink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: protein binding [IEALink to PubMed article]
    structural molecule activity [IEALink to PubMed article]
    protein transporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPIKFHEH LQLPNAGIRV PNITFSNVTM ESDKNIVVRE MIGDQQQVVI IDLADTANPT  60
   61 RRPISADSVI MHPTAKILAL KSGKTLQIFN IELKAKVKAH QNVEDVVYWK WISEKTIALV 120
  121 SDTAVYHWSI EGDAAPVKMF DRHQSLAGTQ IINYRADAEN KWLVLIGISA KDSRVVGSMQ 180
  181 LYSTERKVSQ PIEGHAACFV RFKVDGNQNP SNLFCFSVKT DNGGKLHVIE VGTPAAGNTP 240
  241 FQKKNVDVPY TADTAGDFPV SMQVSAKQGI IYLVTKQGYV HLYDVESGTR IYSNRISTDT 300
  301 VFVTCEYTAT GGIMGINRKG QVLSVSIDEA NLVPFVTNQL QNPDLALKLA VRCDLPGAEE 360
  361 LFVRKFNLLF SNGQFGESAK VAASAPQGIL RTPATIQKFQ QCPSTGPGPS PLLQYFGILL 420
  421 DQGKLNKYET LELCRPVLAQ GRKELITKWL NDQKLECCEE LGDLIKPHDV NTALSVYLRG 480
  481 NVPHKVVQSF AETGQFDKIV MYAKRVGFQP DYLFQLRQIL RNSNPDHGAK FAQLLVSESE 540
  541 NGEPLADLSQ IIDCFMEVQA VQPCTSFLLE VLKGDKPEEG HLQTRLLEMN LLAAPAVADA 600
  601 ILANKMFSHY DRAAIGQLCE KAGLLQRALE HFTDLYDIKR TVVHTHLLKP DWLVGYFGSL 660
  661 SVEDSVECLK AMLTQNIRQN LQVVVQIASK YHEQLGADKL IEMFENHKSY EGLFYFLGSI 720
  721 VNFSQDPEVH FKYIQAATRT GQIKEVERIC RESQCYDAER VKNFLKEAKL NDQLPLIIVC 780
  781 DRHNMVHDLV LYLYRNQLQK YIEVFVQKVN AARLPIVVGA LLDVDCSEDA IKQLIINTRG 840
  841 KFDIDELVEE VEKRNRLKLL NHWLESKIQE GATDAATHNA MAKIYIDSNN NPERFLKENP 900
  901 YYDSKVVGKY CEKRDPHYAF LSYERGQCDA ELINVCNENS LFKNLARYLV KRRDFTLWEQ 960
  961 VLNEENVHRR QLIDQVVQTA LSETQDPEDI SVTVKAFMAA DLPNELIELL EKIVLDNSAF1020
 1021 SEHRNLQNLL ILTAMRADRT RVMEYIQKLD NYDAPDIANI AITSELYEEA FAIFKKFDVN1080
 1081 SSAINVLIEN VNNLDRAYEF AEKCNQSDVW ASLAKAQLQQ NLVKEAVDSF IKADDPGAYM1140
 1141 EVVNKCSQTE HWEDLVRYLQ MARKKSRESY IETELVFALA KTGRLTELEE FIAGPNHAQI1200
 1201 GQIGDRCFDN GMFDSAKILF NNVSNFAKLS VTLVRLGEYQ GAVDAARKAN STKTWKQVCF1260
 1261 SCVENGEFRL AQMCGLHIVV HADELEELIN FYQDRGHFEE LIALLEAALG LERAHMGMFT1320
 1321 ELAILYSKYK PEKMREHLEL FWSRVNIPKV LRAAEQAHLW SELVFLYDKY EEYDNAALTM1380
 1381 MQHPTESWRE QHFKEVIAKV ANVELYYKAM QFYLDYKPLL LNDLLTVLSP RLDHSRTVLF1440
 1441 FNKLKQIPLV KPYLRQVQNL NNKAINEALN QLLIDEEDHA GLRSSIEAQD NFDNITLAQQ1500
 1501 LEKHPLVEFR RISAYLFKGN NRWKQSIELC KKDKLYKDAM EYAAESRNGE LAEELLSFFL1560
 1561 DEKLYDCFAA SLYHCYDLLH PDVIMELAWK HKIMDYAMPY MIQVMRDYQT RLEKLERSEH1620
 1621 ERKEEKAEQQ QNNGMTMEPQ LMLTYGAPAP QMTYPGTTGG YGGQPAYGQP GQPGYNAPGF1680
 1681 M

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered No Comments Cheeseman, I.M., et al. (2004)
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle