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Protein Overview: SPBC1734.01c

General Information:
Name(s) found: SPBC1734.01c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • RNA-binding protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 682 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: rRNA processing [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKQTKPIN AKSRSESNVV ADPRFQSVHS DPRFSRLKRG NFKVKVDERF KSLKEDKDFK  60
   61 TTASVDRYGR PLNQDKATKE IDRLYELENE GSSSSSESSE ITDNEEVASA SSKSTKSEEL 120
  121 TDEESEDEEV YDPARGEGII STSESSDESD AESETEAQPE ISELAGIEPE ENIPRGSETN 180
  181 RLAVVNMDWD NLQAVDLFVA LSSFCPPGGK LLKVSIYPSE FGKSRMAAEH VQGPPRDIFT 240
  241 PADNQPSSAE LHEAQKFGFD NNESDQDEED ALIEEDLGNE FDMVKLRQYQ LERLRYYYAV 300
  301 VECDSVRTAK VIYETCDGAE YETSANIYDL RFIPDDVTFD DDESREVCTK APEKYEPRDF 360
  361 VTDALQHSKV KLSWDAEDPH RKDLIKKAFT SQDIEDLDFS AYIASSESED EDVDVIRSRY 420
  421 QKLLSGDADD FQANSNPFED DDKLEGANGE MEVTFTSGFD VDNNANSSEK DETTIEKYKR 480
  481 KAAERKQRRK ELRQLKKTKD DEGEGSDVDL GFDDPFFKDK DASRNNKKNK KGKHTQIEDP 540
  541 TAASKEELEN LVREDENDSE QLDHFDMKSI LKAEKFKKNR KLKKKASNLE GLQEGFEADV 600
  601 SDPRFAALYT NHNFALDPTN PHFKRTKTVE KIMDESRKRR SNQLEQTQDG KPELKIKKRK 660
  661 AEKGDQRQEL DRIVKSIKRS GK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..239] deduced N/A No confident structure predictions are available.
    2 View Details [240..353] deduced N/A No confident structure predictions are available.
    3 View Details [354..682] PSI-BLAST 6.0 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle