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Protein Overview: SPCC1682.05c

General Information:
Name(s) found: SPCC1682.05c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • signal recognition particle subunit [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 597 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    protein complex [RCALink to PubMed article]
    signal recognition particle, endoplasmic reticulum targeting [ISSLink to PubMed article]
    Biological Process: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [ISSLink to PubMed article]
    Molecular Function: endoplasmic reticulum signal peptide binding [ISSLink to PubMed article]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPHVKLSTS LVIIAFRYLP NNFNDSRLGC DNLSTVGLCL KNGTGEVLFS GLIKQMANFY  60
   61 IFPLLLEARS DHFYEGNEYI KYLSHRIHGL RKSLHITQRG GKPKSSVDKR YAEILLFNAD 120
  121 RAFQQFVFLR SSQRRHALRR LKRADQFGKE LVSFTNAFDC NDHIFYLEAI AFAKYIEGTL 180
  181 NYEKRDWEGS LSAFSISRLS FLVLQNKIDT LAEHEKSVLG ELQNQIDSNL RYVAQRTGLQ 240
  241 NQTKSLDILM LSSIPKDEEV IQHVNSVDSE ILQMTGDEQD SLQTITVIEW RDQRVKIEHP 300
  301 DVVLALYAIH DVKNSPGTID SKRDRLLAAW ARAEEITKSV LDNTGLEDEQ KFQTLSICYT 360
  361 YLAYNVVLLR IQRDLAVEND SELVASQAQL RSRQSLYDSI IKNIEIAKEL PGIARDTGMT 420
  421 AQLEAQISLA KSKRCQAIAD AYQAQDKLAS LAMCVRAASY LQQVNDILRN FEEKPHLIAF 480
  481 DIIPELKKDE KELKKKILLL QSLASMGNIN QPPKNLSLVE TLDSYQTLAE LEPSWNLTDA 540
  541 DIRAIPAKPL FFDLAITYLG QQTSFDKKKA QPEKPVTSVS KEPKQKNKGF FSSLLGR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..162] deduced N/A No confident structure predictions are available.
    2 View Details [163..297] deduced N/A No confident structure predictions are available.
    3 View Details [298..597] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle