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Protein Overview: SPBC16A3.08c

General Information:
Name(s) found: SPBC16A3.08c [Sanger Pombe]
Description(s) found:
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  • gi|78111901|sp|O42914.1|YBI8_SCHPO RecName: Full=Uncharacterized protein C16A3.08c [NCBI NR]
  • pir||T39544 suppressor protein mpt4 homolog - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|2842507|emb|CAA16859.1| serpine1 related protein (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113573|ref|NP_596781.1| nuclear telomere cap complex subunit (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • nuclear telomere cap complex subunit [Sanger Pombe]
  • Uncharacterized protein C16A3.08c OS=Schizosaccharomyces pombe GN=SPBC16A3.08c PE=1 SV=1 [Swiss-Prot]
  • SIMILAR TO S. CEREVISIAE SUPPRESSOR PROTEIN MPT4 A SPECIFIC AFFINITY FOR GUANINE-RICH QUADRUPLEX NUCLEIC ACIDS: O42914;P78760; [pompepVF.fasta]
  • SIMILARITY TO YEAST SUPPRESSOR PROTEIN MPT4 APROTEIN WITH SPECIFIC AFFINITY FOR GUANINE-RICH QUADRUPLEX NUCLEIC ACIDS: O42914;P78760; [pompepV13]
  • Hypothetical 30.9 kDa protein C16A3.08C in chromosome II [pompep4896]
  • |||similar to S. cerevisiae STM1 [pompepnew.fasta]
  • SPBC16A3.08c protein [4896.FASTAC]
  • |||nuclear telomere cap complex (predicted)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • similarity to yeast suppressor protein mpt4 [Schizosaccharomyces pombe]gi|2842507|emb|CAA16859.1| SPBC16A3.08c [Schizosaccharomyces pombe]gi|7493444|pir||T39544 suppressor protein mpt4 homolog - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||nuclear telomere cap complex |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O42914) Hypothetical 30.9 kDa protein C16A3.08C in chromosome II [pompep4896_normal_reversed]
  • |||serpine1 related protein |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC16A3.08c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Protein C16A3.08c in chromosome II [nr-271106-contam.fasta]
  • SPBC16A3.08c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |||Stm1 homolog |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Uncharacterized protein C16A3.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16A3.08c PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 284 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    Biological Process: regulation of translational elongation [ISS]
    telomere maintenance [ISSLink to PubMed article]
    TOR signaling pathway [ISS]
    Molecular Function: telomeric DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVASKNLFD LLGEETPAAT TTEKKTAASR DKKRSDSPPV PRELVAQSTT SRKRDPNQPT  60
   61 PRERTVNKKA DQPRRRRQAP QGNEAFAREG KEARANNAAH PVDATGAPSN RRNARARRGR 120
  121 EFDRHSQTGR VDTKKATERG WGDLVNSAAN PDVAENEGNT PSGAQTPAAE EENVKTLDEY 180
  181 LSERKSAAKP VGRTVEKLEN ATKVEKSAPE ELFASLKKSA SQKKSAAKES KPKKVLLDIE 240
  241 QTFTARPARG GRPNRAPRRG PSETASKTQQ APPTLSETDF PALA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run dam1 No Comments Liu X, et al. (2005)
    View Run None Entered Lid1-TAP APC complex on iontrap. Unpublished Data

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..151] MSA 2.018984 View MSA. No confident structure predictions are available.
    2 View Details [152..284] FFAS03 1.02 No description for 2j63A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle