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Protein Overview: ofd1

General Information:
Name(s) found: ofd1 / SPBC6B1.08c [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • 2-oxoglutarate and Fe(II) dioxygenase domain containing protein 1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 515 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    ribonucleoprotein complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: translational termination [ISS]
    response to hypoxia [IEPLink to PubMed article]
    positive regulation of proteasomal ubiquitin-dependent protein catabolic process [IGILink to PubMed article]
    negative regulation of transcription by transcription factor catabolism [IMPLink to PubMed article]
    nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [ISSLink to PubMed article]
    Molecular Function: L-ascorbic acid binding [IEA]
    poly(A) RNA binding [ISSLink to PubMed article]
    iron ion binding [IEA]
    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [IEA]
    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDTQQPTVL DRFAPHALDT SEAERLSREY HKNGPYNHVV IRPLINDTLL RNVRKELMEN  60
   61 IHFTEKVTDI YRVWQTGDLA NLDGLDKKEQ NMLKYLRQVR DALYSEEFRS HVQKITGCGP 120
  121 LSASKKDLSV NVYSKGCHLM NHDDVIGTRC ISYILYLVEP DEGWKPEYGG ALRLFPTLQP 180
  181 SFPAADFCHS IPPQWNQLSF FRVKPGHSFH DVEEVYVDKP RMAISGWFHY PQPGEPGYDA 240
  241 NYCDNTVSTL QSLTMKQMDL ELPRFSYYPV VKPEPLSKQD TDILSNYINP LYLTPDGIEK 300
  301 LSKRFFQDSV IVLVEFLNQE FANTLLKRII DAERQPTPMH SSEVSFPWKT AIPPHKHRYL 360
  361 YLDHEEFGPD IILPMDLQRL PAFQRWIQLV SGLPLRSFHQ VGRRFRPGSD FTLATTNDTA 420
  421 LLEATLCLSP GTGIANTDNG AYDIYMIGDE DPDVDAAVYR GDQQDDSILL SLPAAWNVFS 480
  481 LVYRDEGVLQ FVKYVSRQAE SSRWDIYSQW NPVAE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..248] PSI-BLAST 50.0 No description for 2hbtA was found.
    2 View Details [249..515] FFAS03 1.41 No description for 2hbtA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle