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Protein Overview: SPAC10F6.08c

General Information:
Name(s) found: SPAC10F6.08c [Sanger Pombe]
Description(s) found:
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  • pir||T37502 hypothetical protein SPAC10F6.08c - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582080|sp|O42648.1|YF98_SCHPO RecName: Full=HMG box-containing protein C10F6.08c [NCBI NR]
  • gi|2661613|emb|CAA15721.1| Ino80 complex HMG box protein Nht1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19114171|ref|NP_593259.1| HMG box protein [Schizosaccharomyces pombe] [NCBI NR]
  • HMG box protein [Sanger Pombe]
  • HMG box-containing protein C10F6.08c OS=Schizosaccharomyces pombe GN=SPAC10F6.08c PE=1 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; SEQUENCE ORPHAN: O42648; [pompepVF.fasta]
  • Hypothetical protein [pompep4896]
  • |||hypothetical protein [pompepnew.fasta]
  • SPAC10F6.08c protein [4896.FASTAC]
  • |||transcriptional regulator|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|2661613|emb|CAA15721.1| SPAC10F6.08c [Schizosaccharomyces pombe]gi|7490761|pir||T37502 hypothetical protein SPAC10F6.08c - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • (O42648) Hypothetical protein [pompep4896_normal_reversed]
  • |nht1||Ino80 complex HMG box protein Nht1|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPAC10F6.08c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC10F6.08c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • HMG box-containing protein C10F6.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC10F6.08c PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 341 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Ino80 complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [IPILink to PubMed article]
    regulation of transcription, DNA-dependent [RCALink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENPPYHVSI SKSEEIKYRQ KCKDLKARIQ EIQKGNQELL SKYEVIRRAV KRGRLERAIL  60
   61 MEQLELQSEA KSREFGQRSE PSPPPPPEGI KIKISTKGAG NPSAKKLKIS TEETSDTNVA 120
  121 LNNTSEISHK SSNNSQPKDA SVNDTDADFE QQNQVVQSKD EKITNTDPIP SPIITNLKTE 180
  181 SSKSSGAKKA TSNAKITDTM LFNHFSSIQK PKLKAEGSTL KGQALKKTLE DTWNNLTEEE 240
  241 KKPYHEGLLA AREKAREARR RRSAQNSAKL EKEKAKEKQK DKDQEQDTVS DKNQIDEIEK 300
  301 GQKEVDEEPV SEPTTSPILP PKNQEPIRMG GFTVVNRSSN A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..341] PSI-BLAST 19.30103 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle