Protein Overview: yip11, yip12

General Information:
Name(s) found:	yip12 / SPAPB17E12.02 [Sanger Pombe] yip11 / SPAC19B12.12c [Sanger Pombe]
Description(s) found: SHOW ONLY BEST	gi\|9588469\|emb\|CAC00560.1\| SMN family protein Yip11 [Schizosaccharomyces pombe] [NCBI NR] gi\|7594665\|emb\|CAB88094.1\| Yip1p (Yab8p interacting protein 1) [Schizosaccharomyces pombe] [NCBI NR] gi\|74624906\|sp\|Q9P347.1\|YIP11_SCHPO RecName: Full=Survival of motor neuron protein-interacting protein yip11; Short=SMN-interacting protein yip11; AltName: Full=Yab8-interacting protein 1 [NCBI NR] gi\|67992722\|ref\|NP_001018218.1\| SMN family protein Yip12 [Schizosaccharomyces pombe] [NCBI NR] gi\|19571746\|emb\|CAD27495.1\| SMN family protein Yip12 [Schizosaccharomyces pombe] [NCBI NR] gi\|19115687\|ref\|NP_594775.1\| SMN family protein Yip11 [Schizosaccharomyces pombe] [NCBI NR] SMN family protein Yip12 [Sanger Pombe] SMN family protein Yip11 [Sanger Pombe] (Q9P347) Survival of motor neuron protein-interacting protein yip1 (SMN-interacting protein yip1) (Yab8-interacting protein 1) [Swiss-Prot] Survival of motor neuron protein-interacting protein yip11 OS=Schizosaccharomyces pombe GN=yip11 PE=1 SV=1 [Swiss-Prot] STRUCTURAL SIMILARITY WITH SMN PROTEIN; YIP1P; PUTATIVE SMN1/YAB8 INTERACTING PROTEIN; BASED ON 2 HYBRID DATA AND SIMILAR TO HUMAN SIP1; POSSIBLY INVOLVED IN SPLICEOSOMAL SNRNP BIOGENESIS: ;N0ACC; [pompepVF.fasta] STRUCTURAL SIMILARITY WITH SMN PROTEIN; YIP1P; PUTATIVE SMN1/YAB8 INTERACTING PROTEIN; BASED ON 2 HYBRID DATA AND SIMILARITY TO HUMAN SIP1; POSSIBLE ROLE IN SPLICEOSOMAL SNRNP BIOGENESIS: ;N0ACC; [pompepV13] Yip1p (Structural similarity with SMN protein, yip1p, putative smn1/yab8 interacting protein, based on 2 hybrid data and similar to human SIP1, possibly involved in spliceosomal snRNP biogenesis, no apparent S. cerevisiae ortholog) [pompep4896] \|yip12\|yip1, yip1-b\|structural similarity with SMN protein [pompepnew.fasta] \|yip11\|yip1, yip1-a\|structural similarity with SMN protein [pompepnew.fasta] Yip1 protein (Spac19b12.12c protein) (Yip11 protein) (Yip1-a protein) (Yip1p) (Yab8p interacting protein 1) (Yip1-b protein) (Spapb17e12.02 protein) (Yip12 protein) [4896.FASTAC] \|yip11\|yip1, yip1-a\|SMN family (PMID 10749973)\|Schizosaccharomyces pombe\|chr 1\|\|\|Manual [pombe041504.fasta] \|yip12\|yip1, yip1-b\|SMN family\|Schizosaccharomyces pombe\|chr 1\|\|\|Manual [pombe041504.fasta] yip1p [Schizosaccharomyces pombe]gi\|7594665\|emb\|CAB88094.1\| Yip1p (Yab8p interacting protein 1) [Schizosaccharomyces pombe]gi\|19571746\|emb\|CAD27495.1\| yip1-b [Schizosaccharomyces pombe]gi\|9588469\|emb\|CAC00560.1\| yip1 [Schizosaccharomyces pombe] [nrdb_11152004_Chlamydomonas] \|yip11\|yip1, yip1-a\|SMN family \|Schizosaccharomyces pombe\|chr 1\|\|\|Manual [pompep2242005.fasta] (Q9P347) Yip1p (Structural similarity with SMN protein, yip1p, putative smn1/yab8 interacting protein, based on 2 hybrid data and similar to human SIP1, possibly involved in spliceosomal snRNP biogenesis, no apparent S. cerevisiae ortholog) [pompep4896_normal_reversed] \|yip12\|yip1, yip1-b\|SMN family protein Yip12\|Schizosaccharomyces pombe\|chr 1\|\|\|Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta] \|yip11\|yip1, yip1-a\|SMN family protein Yip11\|Schizosaccharomyces pombe\|chr 1\|\|\|Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta] SPAPB17E12.02 [Schizosaccharomyces pombe] [nr-271106-contam.fasta] hypothetical protein SPAPB17E12.02 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta] Survival of motor neuron protein-interacting protein yip11 (SMN-interacting protein yip11) (Yab8-interacting protein 1) [nr-271106-contam.fasta] Yip1p (Yab8p interacting protein 1) [Schizosaccharomyces pombe] [nr-271106-contam.fasta] SPAC19B12.12c [Schizosaccharomyces pombe] [nr-271106-contam.fasta] hypothetical protein SPAC19B12.12c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta] Survival of motor neuron protein-interacting protein yip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yip11 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
Organism:	Schizosaccharomyces pombe
Length:	235 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA ] cytosol [IDA]
Biological Process:	spliceosomal snRNP assembly [ISS][NAS]
Molecular Function:	protein binding [IPI][ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSKRKRNPL QYQTSGSLDE ETNQRSAFPQ IDNNSASESL EYDIPLDGLD YLATVREEAR  60
   61 KLVPFVAARR EPETRETIPL RKLEIEAGKK SFDPFLRYLL NIIDKEGERL EQYMESSSLD 120
  121 ASILPKNLQQ WRVYIEHKAP CWAILAVVDL ATVLEILESL SSWLEKDAID LQSQWIFCFC 180
  181 YKLPELLNGE DISTLRSVLK SLRSTHTSFP ALQMSASALQ AVLVYRYGQK DLFQT

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..235]	MSA	1.002993	View MSA. No confident structure predictions are available.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.81

Protein Overview: yip11, yip12

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: