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Protein Overview: spt4

General Information:
Name(s) found: spt4 / SPBC21C3.16c [Sanger Pombe]
Description(s) found:
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  • gi|74625407|sp|Q9P7K8.1|SPT4_SCHPO RecName: Full=Transcription elongation factor spt4; AltName: Full=Chromatin elongation factor spt4 [NCBI NR]
  • gi|7106081|emb|CAB76052.1| transcription elongation factor complex subunit Spt4 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113388|ref|NP_596596.1| transcription elongation factor complex subunit Spt4 [Schizosaccharomyces pombe] [NCBI NR]
  • pir||T50360 homolog to Spt4 transcription initiation proteins [imported] - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • transcription elongation factor complex subunit Spt4 [Sanger Pombe]
  • Transcription elongation factor spt4 OS=Schizosaccharomyces pombe GN=spt4 PE=1 SV=1 [Swiss-Prot]
  • ZINC FINGER PROTEIN; TRANSCRIPTIONAL REGULATOR; SIMILAR TO SPT4 TRANSCRIPTION INITIATION PROTEINS INCLUDING S. CEREVISIAE SPT4: Q9P7K8; [pompepVF.fasta]
  • Similar to Spt4 transcription initiation proteins [pompep4896]
  • |spt4||zinc finger protein [pompepnew.fasta]
  • SPBC21C3.16c protein (Spt4 protein) [4896.FASTAC]
  • |spt4||transcriptional regulator|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • similar to Spt4 transcription initiation proteins [Schizosaccharomyces pombe]gi|7106081|emb|CAB76052.1| SPBC21C3.16c [Schizosaccharomyces pombe]gi|11288466|pir||T50360 homolog to Spt4 transcription initiation proteins [imported] - fission yeast (Schizos [nrdb_11152004_Chlamydomonas]
  • |spt4||transcription elongation factor Spt4|Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (Q9P7K8) Similar to Spt4 transcription initiation proteins [pompep4896_normal_reversed]
  • |spt4||transcription elongation factor complex subunit Spt4|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • Transcription elongation factor spt4 (Chromatin elongation factor spt4) [nr-271106-contam.fasta]
  • hypothetical protein SPBC21C3.16c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBC21C3.16c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Transcription elongation factor spt4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt4 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 105 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    DSIF complex [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    chromosome, centromeric region [IEA]
    Biological Process: chromatin remodeling [ISSLink to PubMed article]
    negative regulation of RNA elongation from RNA polymerase II promoter [IGILink to PubMed article]
    positive regulation of transcription [IEA]
    mRNA processing [IPILink to PubMed article]
    Molecular Function: RNA polymerase II transcription elongation factor activity [IGILink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]
    protein binding [IPILink to PubMed article]
    positive transcription elongation factor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKLNRTRSR ACLICGIVLP HSVFANKGCP NDGVDDVETF TSPVFEGIMA MMSPTESWVA  60
   61 RWQRIDTFTP GIYATRVQGV LNEDVVESLR RRGINYRPRN GTSWD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..105] PSI-BLAST 36.69897 No description for 2exuA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle