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Protein Overview: sec1

General Information:
Name(s) found: sec1 / SPCC584.05 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • SNARE binding protein Sec1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 693 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cell division site [IDALink to PubMed article]
    cell tip [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: vesicle fusion [ISSLink to PubMed article]
    vesicle docking during exocytosis [ISSLink to PubMed article]
    Molecular Function: SNARE binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLLELQKEL FLSKINSVEC ATKWKVLIVD TKTADIINHF ITIHSLLEEK IAAVEILENP  60
   61 RTPNSSFEAL YILHSEEKLV DCILKDEEYD KRYPGIHIVF LDMVKEPLIN KLRTSRIASK 120
  121 IRTVQVAYLD FTSLESRYFQ VHDSFSGLRL YHPSNAAIIR QELSKVAHGI FSVCVSLGIS 180
  181 PNIRCYYPKN APHASKTMSF ILANQLSEIV EEYCSKHPGY HEAASKSTCL IVDRSLDTAA 240
  241 PFLHEFTYQA MIHDLLPIKN EQYPYEILGP QGTEKRTGKL DDDDLVYTTI RHMHMRDAIE 300
  301 KLMKDFNQFC IDNTLFLDKE RATSLNDMRS MLAGLSDFQE LRDQYSLHLT MAQECMNIFE 360
  361 KQQLNLIGAI EQDLSTGSNV EGKVPRSVLS ELLPLLDEGN AEESTKIRLL LLYIIYRDGI 420
  421 ILQDLFRLFR HSNLSTSREQ IFQNLEQLGT RVIKNLTDQS SKRKEVANSL PAGEDVYELS 480
  481 RYVPTLKVVL ENLIQDKLDP ELFPYVRNTT PQTEVSMEQT SLRSSRPSWT RSRSMASKLP 540
  541 REKMLVFVAG GTTFSELRTC YELSDKYNKD IYIGSTVCYS PNEWLDFFSK FQQPREALKF 600
  601 PEDKPRHIPC LEARPSPNRI QEQPNIDVPS TRYENTSSSD AVSIHKDEKK SKGKSHKLGK 660
  661 LMMSSKKDKD KSKEKVPTYG TSDKKKKKRF GVF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..599] PSI-BLAST 175.0 Neuronal Sec1, NSec1
    2 View Details [600..693] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNARE binding
    		•  4.56428593085019 bayes_pls_golite062009
  • syntaxin binding
    		•  3.46044132736061 bayes_pls_golite062009
  • binding
    		•  2.7837022903231 bayes_pls_golite062009
  • protein binding
    		•  2.77285532000616 bayes_pls_golite062009
  • syntaxin-1 binding
    		•  0.269372794919901 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle